| SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data S Kang, N Borgsmüller, M Valecha, J Kuipers, JM Alves, S Prado-López, ... Genome Biology 23 (1), 248, 2022 | 10 | 2022 |
| Synthetic lethality prediction in DNA damage repair, chromatin remodeling and the cell cycle using multi-omics data from cell lines and patients. M Markowska, MA Budzinska, A Coenen-Stass, S Kang, E Kizling, ... Scientific Reports 13 (1), 7049, 2023 | 1 | 2023 |
| DelSIEVE: joint inference of single-nucleotide variants, somatic deletions, and cell phylogeny from single-cell DNA sequencing data S Kang, N Borgsmüller, M Valecha, M Markowska, J Kuipers, ... bioRxiv, 2023.09. 09.556903, 2023 | 1 | 2023 |
| SLIDE-VIP: a comprehensive, cell line-and patient-based framework for synthetic lethality prediction in DNA damage repair, chromatin remodeling and cell cycle M Markowska, MA Budzinska, A Coenen-Stass, S Kang, E Kizling, ... bioRxiv, 2022.07. 07.499118, 2022 | | 2022 |
| Probabilistic graphical models for inferring tumor phylogeny and genomic variants from single cell DNA sequencing data S Kang | | |
