Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 638 | 2011 |
Molecular profiling reveals unique immune and metabolic features of melanoma brain metastases GM Fischer, A Jalali, DA Kircher, WC Lee, JL McQuade, LE Haydu, ... Cancer discovery 9 (5), 628-645, 2019 | 288 | 2019 |
A multi-tissue full lifespan epigenetic clock for mice MJ Thompson, K Chwiałkowska, L Rubbi, AJ Lusis, RC Davis, ... Aging (Albany NY) 10 (10), 2832, 2018 | 201 | 2018 |
Genomes of the mouse collaborative cross A Srivastava, AP Morgan, ML Najarian, VK Sarsani, JS Sigmon, ... Genetics 206 (2), 537-556, 2017 | 199 | 2017 |
Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis) TI Shaw, A Srivastava, WC Chou, L Liu, A Hawkinson, TC Glenn, ... PloS one 7 (11), e48472, 2012 | 90 | 2012 |
Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment H Sun, S Cao, RJ Mashl, CK Mo, S Zaccaria, MC Wendl, SR Davies, ... Nature communications 12 (1), 5086, 2021 | 85 | 2021 |
Coincidental loss of DOCK8 function in NLRP10-deficient and C3H/HeJ mice results in defective dendritic cell migration JK Krishnaswamy, A Singh, U Gowthaman, R Wu, P Gorrepati, ... Proceedings of the National Academy of Sciences 112 (10), 3056-3061, 2015 | 76 | 2015 |
The genome of C57BL/6J “Eve”, the mother of the laboratory mouse genome reference strain VK Sarsani, N Raghupathy, IT Fiddes, J Armstrong, F Thibaud-Nissen, ... G3: Genes, Genomes, Genetics 9 (6), 1795-1805, 2019 | 65 | 2019 |
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders H Fairfield, A Srivastava, G Ananda, R Liu, M Kircher, A Lakshminarayana, ... Genome research 25 (7), 948-957, 2015 | 63 | 2015 |
Identification of EOMES-expressing spermatogonial stem cells and their regulation by PLZF M Sharma, A Srivastava, HE Fairfield, D Bergstrom, WF Flynn, RE Braun Elife 8, e43352, 2019 | 55 | 2019 |
Systematic establishment of robustness and standards in patient-derived xenograft experiments and analysis YA Evrard, A Srivastava, J Randjelovic, JH Doroshow, DA Dean, ... Cancer research 80 (11), 2286-2297, 2020 | 51 | 2020 |
Transcriptome Analysis A Srivastava, J George, RKM Karuturi | 39 | 2018 |
Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines XY Woo, A Srivastava, JH Graber, V Yadav, VK Sarsani, A Simons, ... BMC medical genomics 12, 1-19, 2019 | 37 | 2019 |
Transcriptome Analysis of Sarracenia, an Insectivorous Plant A Srivastava, WL Rogers, CM Breton, L Cai, RL Malmberg DNA research 18 (4), 253-261, 2011 | 35 | 2011 |
Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors G Ananda, S Mockus, M Lundquist, V Spotlow, A Simons, T Mitchell, ... Experimental and molecular pathology 98 (1), 106-112, 2015 | 34 | 2015 |
Genetic architectures of quantitative variation in RNA editing pathways T Gu, DM Gatti, A Srivastava, EM Snyder, N Raghupathy, P Simecek, ... Genetics 202 (2), 787-798, 2016 | 33 | 2016 |
Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries A Srivastava, VM Philip, I Greenstein, LB Rowe, M Barter, C Lutz, ... BMC genomics 15, 1-9, 2014 | 33 | 2014 |
Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation A Srivastava, V Kumar Sarsani, I Fiddes, SM Sheehan, RL Seger, ... DNA Research 26 (1), 37-44, 2019 | 29 | 2019 |
AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes J Mrázek, S Xie, X Guo, A Srivastava Bioinformatics 24 (8), 1041-1048, 2008 | 20 | 2008 |
Transcriptome Analysis of a North American Songbird, Melospiza melodia A Srivastava, K Winker, TI Shaw, KL Jones, TC Glenn DNA research 19 (4), 325-333, 2012 | 18 | 2012 |