| Novel katG mutations causing isoniazid resistance in clinical M. tuberculosis isolates JN Torres, LV Paul, TC Rodwell, TC Victor, AM Amallraja, A Elghraoui, ... Emerging microbes & infections 4 (1), 1-9, 2015 | 120 | 2015 |
| SMRT genome assembly corrects reference errors, resolving the genetic basis of virulence in Mycobacterium tuberculosis A Elghraoui, SJ Modlin, F Valafar BMC genomics 18, 1-14, 2017 | 28 | 2017 |
| Novel katG mutations causing isoniazid resistance in clinical M. tuberculosis isolates. Emerg Microbes Infect 4: e42 JN Torres, LV Paul, TC Rodwell, TC Victor, AM Amallraja, A Elghraoui, ... | 13 | 2015 |
| PBHoover and CigarRoller: a method for confident haploid variant calling on Pacific Biosciences data and its application to heterogeneous population analysis S Ramirez-Busby, A Elghraoui, YB Kim, K Kim, F Valafar bioRxiv, 360370, 2018 | 8 | 2018 |
| Structure-aware Mycobacterium tuberculosis functional annotation uncloaks resistance, metabolic, and virulence genes SJ Modlin, A Elghraoui, D Gunasekaran, AM Zlotnicki, NA Dillon, ... MSystems 6 (6), e00673-21, 2021 | 7 | 2021 |
| Resolving the hypotheticome: annotating m. tuberculosis gene function through bibliomic reconciliation and structural modeling SJ Modlin, D Gunasekaran, AM Zlotnicki, A Elghraoui, N Kuo, CK Chan, ... Preprint at https://doi. org/10.1101/358986, 2018 | 4 | 2018 |
| Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates A Elghraoui, S Mirarab, KM Swenson, F Valafar Bioinformatics 39 (1), btad024, 2023 | 2 | 2023 |
| Hybran: Hybrid reference transfer and ab initio prokaryotic genome annotation A Elghraoui, D Gunasekaran, SM Radecke, E Bishop, F Valafar bioRxiv, 2022.11. 09.515824, 2022 | 1 | 2022 |
| Novel and Reported Compensatory Mutations in rpoABC Associate Specifically with Predominant Mycobacterium tuberculosis Rifampicin Resistance Marker rpoB: S450L D Conkle-Gutierrez, SM Ramirez-Busby, BM Gorman, A Elghraoui, ... bioRxiv, 2022.02. 22.481565, 2022 | 1 | 2022 |
| Novel and reported compensatory mutations in rpoABC genes found in drug resistant tuberculosis outbreaks D Conkle-Gutierrez, SM Ramirez-Busby, BM Gorman, A Elghraoui, ... Frontiers in Microbiology 14, 1265390, 2024 | | 2024 |
| MVP: Detection of motif-making and-breaking mutations A Elghraoui, F Valafar arXiv preprint arXiv:2210.09842, 2022 | | 2022 |
| Quantifying Hierarchical Conflicts in Homology Statements KM Swenson, A Elghraoui, F Valafar, S Mirarab, M Weller RECOMB International Workshop on Comparative Genomics, 146-167, 2022 | | 2022 |
| Evaluating Impacts of Syntenic Block Detection Strategies on Rearrangement Phylogeny Using M. tuberculosis Isolates A Elghraoui, S Mirarab, KM Swenson, F Valafar bioRxiv, 2022.02. 18.481113, 2022 | | 2022 |
| Structure-aware M. tuberculosis functional annotation uncloaks resistance, metabolic, and virulence genes SJ Modlin, A Elghraoui, D Gunasekaran, AM Zlotnicki, NA Dillon, ... bioRxiv, 358986, 2018 | | 2018 |
| Resolving the hypotheticome: annotating M. tuberculosis gene function through bibliomic reconciliation andstructural modeling SJ Modlin, D Gunasekaran, AM Zlotnicki, A Elghraoui, N Kuo, CK Chan, ... bioRxiv, 358986, 2018 | | 2018 |
| Modeling of metabolism and gene expression under hypoxia in Mycobacterium tuberculosis A Elghraoui San Diego State University, 2015 | | 2015 |
| Lineage-specific Copy Number and Distribution of IS6110 in de novo-assembled Mtb Isolates S Modlin, S Patel, L Fink, A Elghraoui, S Hoffner, F Valafar | | |
