| The Kipoi repository accelerates community exchange and reuse of predictive models for genomics Ž Avsec, R Kreuzhuber, J Israeli, N Xu, J Cheng, A Shrikumar, A Banerjee, ... Nature biotechnology 37 (6), 592-600, 2019 | 151 | 2019 |
| Technical note on transcription factor motif discovery from importance scores (TF-MoDISco) version 0.5. 6.5 A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin, ... arXiv preprint arXiv:1811.00416, 2018 | 94 | 2018 |
| GENCODE: reference annotation for the human and mouse genomes in 2023 A Frankish, S Carbonell-Sala, M Diekhans, I Jungreis, JE Loveland, ... Nucleic acids research 51 (D1), D942-D949, 2023 | 80 | 2023 |
| High-throughput discovery and characterization of human transcriptional effectors J Tycko, N DelRosso, GT Hess, A Banerjee, A Mukund, MV Van, BK Ego, ... Cell 183 (7), 2020 | 75 | 2020 |
| Technical Note on Transcription Factor Motif Discovery from Importance Scores (TF-MoDISco) version 0.5. 6.5. ArXiv181100416 Cs Q-Bio Stat [Internet]. 2020 [cited 2020 Oct 26] A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin | 31 | 1811 |
| Tf-Modisco v0. 4.4. 2-Alpha A Shrikumar, K Tian, A Shcherbina, Ž Avsec, A Banerjee, M Sharmin, ... arXiv preprint arXiv:1811.00416, 2018 | 25 | 2018 |
| Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease M Ameen, L Sundaram, M Shen, A Banerjee, S Kundu, S Nair, ... Cell 185 (26), 4937-4953. e23, 2022 | 24 | 2022 |
| Tf-modisco v0. 4.2. 2-alpha: Technical note A Shrikumar, K Tian, A Shcherbina, Ž Avsec, A Banerjee, M Sharmin, ... Preprint at arXiv https://arxiv. org/abs/1811.00416 v2, 2018 | 10 | 2018 |
| Technical note on transcription factor motif discovery from importance scores (TF-MoDISco) A Shrikumar, K Tian, Z Avsec, A Shcherbina, A Banerjee, M Sharmin, ... bioRxiv, 2018 | 8 | 2018 |
| Technical note on transcription factor motif discovery from importance scores (tf-modisco) version 0.5. 1.1. arXiv preprint 2018 A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin arXiv preprint arXiv:1811.00416, 0 | 5 | |
| Neural network modeling of differential binding between wild-type and mutant CTCF reveals putative binding preferences for zinc fingers 1–2 IM Kaplow, A Banerjee, CS Foo BMC genomics 23 (1), 295, 2022 | 4 | 2022 |
| Deep Reinforcement Learning to Play Space Invaders N Desai, A Banerjee Technical Report, 2017 | 2 | 2017 |
| Bose–Einstein condensation of a Gaussian random field in the thermodynamic limit P Mounaix, SN Majumdar, A Banerjee Journal of Physics A: Mathematical and Theoretical 45 (11), 115002, 2012 | 1 | 2012 |
| Complexity of in-vivo DNA binding preferences of human C2H2 zinc finger transcription factors A Banerjee Stanford University, 2022 | | 2022 |
| Knowledge extraction from medical literature using Recurrent Neural Networks A Banerjee | | |
