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Weifang Liu
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Cell-type-specific 3D epigenomes in the developing human cortex
M Song, MP Pebworth, X Yang, A Abnousi, C Fan, J Wen, JD Rosen, ...
Nature 587 (7835), 644-649, 2020
1182020
Placental genomics mediates genetic associations with complex health traits and disease
A Bhattacharya, AN Freedman, V Avula, R Harris, W Liu, C Pan, AJ Lusis, ...
Nature communications 13 (1), 706, 2022
292022
A comprehensive comparison on cell-type composition inference for spatial transcriptomics data
J Chen, W Liu, T Luo, Z Yu, M Jiang, J Wen, GP Gupta, P Giusti, H Zhu, ...
Briefings in Bioinformatics 23 (4), bbac245, 2022
282022
Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients
Q Sun, W Liu, JD Rosen, L Huang, RG Pace, H Dang, PJ Gallins, EE Blue, ...
Human Genetics and Genomics Advances 3 (2), 2022
152022
Genetic modifiers of cystic fibrosis lung disease severity: whole-genome analysis of 7,840 patients
YH Zhou, PJ Gallins, RG Pace, H Dang, MA Aksit, EE Blue, ...
American journal of respiratory and critical care medicine 207 (10), 1324-1333, 2023
102023
MagicalRsq: Machine-learning-based genotype imputation quality calibration
Q Sun, Y Yang, JD Rosen, MZ Jiang, J Chen, W Liu, J Wen, LM Raffield, ...
The American Journal of Human Genetics 109 (11), 1986-1997, 2022
102022
Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants
W Zhong, W Liu, J Chen, Q Sun, M Hu, Y Li
Frontiers in cell and developmental biology 10, 957292, 2022
102022
Functional characterization of Alzheimer’s disease genetic variants in microglia
X Yang, J Wen, H Yang, IR Jones, X Zhu, W Liu, B Li, CD Clelland, W Luo, ...
Nature Genetics 55 (10), 1735-1744, 2023
92023
SnapHiC2: A computationally efficient loop caller for single cell Hi-C data
X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu
Computational and structural biotechnology journal 20, 2778-2783, 2022
92022
Understanding regulatory mechanisms of brain function and disease through 3d genome organization
W Liu, W Zhong, J Chen, B Huang, M Hu, Y Li
Genes 13 (4), 586, 2022
82022
Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis
MA Aksit, H Ling, RG Pace, KS Raraigh, F Onchiri, AV Faino, K Pagel, ...
The American Journal of Human Genetics 109 (10), 1894-1908, 2022
72022
3D epigenomic characterization reveals insights into gene regulation and lineage specification during corticogenesis
M Song, MP Pebworth, X Yang, A Abnousi, C Fan, J Wen, JD Rosen, ...
BioRxiv, 2020.02. 24.963652, 2020
72020
DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network
Y Li, J Wen, G Li, J Chen, Q Sun, W Liu, W Guan, B Lai, J Szatkiewicz, ...
Research Square, 2023
42023
Innovative computational approaches shed light on genetic mechanisms underlying cognitive impairment among children born extremely preterm
W Liu, Q Sun, L Huang, A Bhattacharya, GW Wang, X Tan, KCK Kuban, ...
Journal of neurodevelopmental disorders 14 (1), 16, 2022
32022
Genetic control of fetal placental genomics contributes to development of health and disease
A Bhattacharya, AN Freedman, V Avula, R Harris, W Liu, C Pan, AJ Lusis, ...
MedRxiv, 2021.04. 12.21255170, 2021
22021
SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model
W Liu, W Zhong, P Giusti-Rodríguez, GW Wang, M Hu, Y Li
bioRxiv, 2023.03. 01.530686, 2023
2023
12. GENOME-WIDE GENETIC CONTROL OF FETAL PLACENTAL GENOMICS INFORMS THE DEVELOPMENT OF HEALTH, DISEASE, AND NEUROPSYCHIATRIC DISORDERS
A Bhattacharya, A Freedman, V Avula, W Liu, C Pan, A Lusis, R Joseph, ...
European Neuropsychopharmacology 51, e46, 2021
2021
MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples
W Liu, Y Yang, A Abnousi, Q Zhang, N Kubo, JSM Beem, Y Li, M Hu
Human Genetics and Genomics Advances 2 (3), 2021
2021
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