Cell-type-specific 3D epigenomes in the developing human cortex M Song, MP Pebworth, X Yang, A Abnousi, C Fan, J Wen, JD Rosen, ... Nature 587 (7835), 644-649, 2020 | 118 | 2020 |
Placental genomics mediates genetic associations with complex health traits and disease A Bhattacharya, AN Freedman, V Avula, R Harris, W Liu, C Pan, AJ Lusis, ... Nature communications 13 (1), 706, 2022 | 29 | 2022 |
A comprehensive comparison on cell-type composition inference for spatial transcriptomics data J Chen, W Liu, T Luo, Z Yu, M Jiang, J Wen, GP Gupta, P Giusti, H Zhu, ... Briefings in Bioinformatics 23 (4), bbac245, 2022 | 28 | 2022 |
Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients Q Sun, W Liu, JD Rosen, L Huang, RG Pace, H Dang, PJ Gallins, EE Blue, ... Human Genetics and Genomics Advances 3 (2), 2022 | 15 | 2022 |
Genetic modifiers of cystic fibrosis lung disease severity: whole-genome analysis of 7,840 patients YH Zhou, PJ Gallins, RG Pace, H Dang, MA Aksit, EE Blue, ... American journal of respiratory and critical care medicine 207 (10), 1324-1333, 2023 | 10 | 2023 |
MagicalRsq: Machine-learning-based genotype imputation quality calibration Q Sun, Y Yang, JD Rosen, MZ Jiang, J Chen, W Liu, J Wen, LM Raffield, ... The American Journal of Human Genetics 109 (11), 1986-1997, 2022 | 10 | 2022 |
Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants W Zhong, W Liu, J Chen, Q Sun, M Hu, Y Li Frontiers in cell and developmental biology 10, 957292, 2022 | 10 | 2022 |
Functional characterization of Alzheimer’s disease genetic variants in microglia X Yang, J Wen, H Yang, IR Jones, X Zhu, W Liu, B Li, CD Clelland, W Luo, ... Nature Genetics 55 (10), 1735-1744, 2023 | 9 | 2023 |
SnapHiC2: A computationally efficient loop caller for single cell Hi-C data X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu Computational and structural biotechnology journal 20, 2778-2783, 2022 | 9 | 2022 |
Understanding regulatory mechanisms of brain function and disease through 3d genome organization W Liu, W Zhong, J Chen, B Huang, M Hu, Y Li Genes 13 (4), 586, 2022 | 8 | 2022 |
Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis MA Aksit, H Ling, RG Pace, KS Raraigh, F Onchiri, AV Faino, K Pagel, ... The American Journal of Human Genetics 109 (10), 1894-1908, 2022 | 7 | 2022 |
3D epigenomic characterization reveals insights into gene regulation and lineage specification during corticogenesis M Song, MP Pebworth, X Yang, A Abnousi, C Fan, J Wen, JD Rosen, ... BioRxiv, 2020.02. 24.963652, 2020 | 7 | 2020 |
DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network Y Li, J Wen, G Li, J Chen, Q Sun, W Liu, W Guan, B Lai, J Szatkiewicz, ... Research Square, 2023 | 4 | 2023 |
Innovative computational approaches shed light on genetic mechanisms underlying cognitive impairment among children born extremely preterm W Liu, Q Sun, L Huang, A Bhattacharya, GW Wang, X Tan, KCK Kuban, ... Journal of neurodevelopmental disorders 14 (1), 16, 2022 | 3 | 2022 |
Genetic control of fetal placental genomics contributes to development of health and disease A Bhattacharya, AN Freedman, V Avula, R Harris, W Liu, C Pan, AJ Lusis, ... MedRxiv, 2021.04. 12.21255170, 2021 | 2 | 2021 |
SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model W Liu, W Zhong, P Giusti-Rodríguez, GW Wang, M Hu, Y Li bioRxiv, 2023.03. 01.530686, 2023 | | 2023 |
12. GENOME-WIDE GENETIC CONTROL OF FETAL PLACENTAL GENOMICS INFORMS THE DEVELOPMENT OF HEALTH, DISEASE, AND NEUROPSYCHIATRIC DISORDERS A Bhattacharya, A Freedman, V Avula, W Liu, C Pan, A Lusis, R Joseph, ... European Neuropsychopharmacology 51, e46, 2021 | | 2021 |
MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples W Liu, Y Yang, A Abnousi, Q Zhang, N Kubo, JSM Beem, Y Li, M Hu Human Genetics and Genomics Advances 2 (3), 2021 | | 2021 |