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Caylee Cunningham
Caylee Cunningham
Verified email at duq.edu
Title
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Year
Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p
JA Imperatore, CL Cunningham, KA Pellegrene, RG Brinson, JP Marino, ...
Nucleic acids research 50 (2), 1017-1032, 2022
312022
Bioinformatics Analysis of the s2m Mutations within the SARS-CoV-2 Omicron Lineages.
CJ Frye, M Shine, JA Makowski, AH Kensinger, CL Cunningham, ...
Journal of Medical Virology, 2022
92022
Structural, Dynamical, and Entropic Differences between SARS-CoV and SARS-CoV-2 s2m Elements Using Molecular Dynamics Simulations
AH Kensinger, JA Makowski, KA Pellegrene, JA Imperatore, ...
ACS Physical Chemistry Au 3 (1), 30-43, 2022
52022
Conserved Elements in the 3'-UTR of SARS-CoV-2: Involvement in Genomic Dimerization and Interactions with Cellular Micrornas
JA Imperatore, CL Cunningham, CJ Frye, KA Pellegrene, JD Evanseck, ...
Biophysical Journal 120 (3), 313a, 2021
32021
Effect of the SARS-CoV-2 Delta-associated G15U mutation on the s2m element dimerization and its interactions with miR-1307-3p
CL Cunningham, CJ Frye, JA Makowski, AH Kensinger, M Shine, ...
RNA 29 (11), 1754-1771, 2023
22023
Delta SARS-CoV-2 s2m structure, dynamics, and entropy: consequences of the G15U mutation
JA Makowski, AH Kensinger, CL Cunningham, CJ Frye, M Shine, ...
ACS Physical Chemistry Au 3 (5), 434-443, 2023
22023
Host microRNA interactions with the SARS-COV-2 viral genome 3′-untranslated region
CJ Frye, C Cunningham, MR Mihailescu
Biophysical Journal 123 (3), 84a, 2024
12024
Biophysical characterization of the G-quadruplex and i-motif in the 5′-untranslated region of the DNMT3a gene
D Brown, CL Cunningham, MR Mihailescu
Biophysical Journal 123 (3), 496a, 2024
2024
Protein-RNA interactions of FMRP and CCND1: Implications of regulation in neurogenesis
R Palumbo, C Cunningham, CJ Frye, MR Mihailescu
Biophysical Journal 122 (3), 217a, 2023
2023
Structural and thermodynamic consequences of the G31U and U5C mutations in the SARS-CoV-2 s2m
AH Kensinger, JA Makowski, KA Pellegrene, CL Cunningham, CJ Frye, ...
Biophysical Journal 122 (3), 359a-360a, 2023
2023
Delta variant versus ancestral SARS-CoV-2 s2m dynamics and relative entropy
JA Makowski, AH Kensinger, KA Pellegrene, C Cunningham, CJ Frye, ...
Biophysical Journal 122 (3), 358a, 2023
2023
Viral-host RNA-RNA interactions in SARS-CoV-2: Study of miR-34a-5p binding interactions within the genome 3'-untranslated region
CJ Frye, C Cunningham, AH Kensinger, JA Makowski, JD Evanseck, ...
Biophysical Journal 122 (3), 359a, 2023
2023
Characterization of a G-quadruplex structure at the 3’end of NEAT1_2 and its role in regulating its stability
CL Cunningham, EM Benner, MR Mihailescu
Biophysical Journal 122 (3), 361a, 2023
2023
Inside Front Cover Image, Volume 95, Number 1, January 2023
CJ Frye, M Shine, JA Makowski, AH Kensinger, CL Cunningham, ...
Journal of Medical Virology 95 (1), e28467, 2023
2023
Micro rna interactions as therapeutic targets for covid-19 and other viral infections
MR Mihailescu, JD Evanseck, JA Imperatore, KAM Guarinoni, ...
US Patent App. 17/451,521, 2022
2022
G quadruplex structures in NEAT1: potential functions in regulating its stability and its interactions with the fused in sarcoma protein
MR Mihailescu, EM Benner, C Cunningham, C Grey, E Milback
Biophysical Journal 121 (3), 166a, 2022
2022
Viral-host RNA-RNA interactions in SARS-CoV-2: study of MIR-760-3p interactions with the genome 3'-untranslated region
CJ Frye, CL Cunningham, KA Pellegrene, AH Kensinger, JA Makowski, ...
Biophysical Journal 121 (3), 207a, 2022
2022
Structural and dynamical impact of the two-nucleotide difference in sequence between SARS-CoV and SARS-CoV-2 s2m using molecular dynamics
AH Kensinger, KA Pellegrene, JA Makowski, CL Cunningham, CJ Frye, ...
Biophysical Journal 121 (3), 207a, 2022
2022
Stem-loop II motif (s2m) structural and dynamical differences between SARS-CoV-2 and b. 1.617. 2 (Delta) variant
JA Makowski, AH Kensinger, KA Pellegrene, C Cunningham, CJ Frye, ...
Biophysical Journal 121 (3), 207a, 2022
2022
Characterization of the S2M G15U mutation associated with the SARS-CoV-2 delta variant
CL Cunningham, CJ Frye, JA Imperatore, KA Pellegrene, AH Kensinger, ...
Biophysical Journal 121 (3), 207a, 2022
2022
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