| Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers JX Caushi, J Zhang, Z Ji, A Vaghasia, B Zhang, EHC Hsiue, BJ Mog, ... Nature 596 (7870), 126-132, 2021 | 274 | 2021 |
| Transcriptional profiling identifies novel regulators of macrophage polarization KY Gerrick, ER Gerrick, A Gupta, SJ Wheelan, S Yegnasubramanian, ... PloS one 13 (12), e0208602, 2018 | 96 | 2018 |
| A conserved intratumoral regulatory T cell signature identifies 4-1BB as a pan-cancer target ZT Freeman, TR Nirschl, DH Hovelson, RJ Johnston, JJ Engelhardt, ... The Journal of clinical investigation 130 (3), 1405-1416, 2020 | 80 | 2020 |
| Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors MSQ Kortenhorst, MD Wissing, R Rodriguez, SK Kachhap, JJM Jans, ... Epigenetics 8 (9), 907-920, 2013 | 39 | 2013 |
| IgM anti-ACE2 autoantibodies in severe COVID-19 activate complement and perturb vascular endothelial function L Casciola-Rosen, DR Thiemann, F Andrade, MI Trejo-Zambrano, ... JCI insight 7 (9), 2022 | 30 | 2022 |
| Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment DN Sidiropoulos, CI Rafie, JK Jang, S Castanon, AG Baugh, E Gonzalez, ... Cancer immunology research 10 (5), 656-669, 2022 | 28 | 2022 |
| HES6 promotes prostate cancer aggressiveness independently of Notch signalling FLF Carvalho, L Marchionni, A Gupta, BA Kummangal, EM Schaeffer, ... Journal of Cellular and Molecular Medicine 19 (7), 1624-1636, 2015 | 23 | 2015 |
| Pervasive promoter hypermethylation of silenced TERT alleles in human cancers D Esopi, MK Graham, JA Brosnan-Cashman, J Meyers, A Vaghasia, ... Cellular Oncology 43, 847-861, 2020 | 17 | 2020 |
| Somatic mitochondrial mutation discovery using ultra-deep sequencing of the mitochondrial genome reveals spatial tumor heterogeneity in head and neck squamous cell carcinoma AD Schubert, EC Broner, N Agrawal, N London, A Pearson, A Gupta, ... Cancer letters 471, 49-60, 2020 | 16 | 2020 |
| Androgen receptor activity in prostate cancer dictates efficacy of bipolar androgen therapy through MYC LA Sena, R Kumar, DE Sanin, EA Thompson, DM Rosen, SL Dalrymple, ... The Journal of Clinical Investigation 132 (23), 2022 | 15 | 2022 |
| ETS2 is a prostate basal cell marker and is highly expressed in prostate cancers aberrantly expressing p63 A Torres, M Alshalalfa, E Davicioni, A Gupta, S Yegnasubramanian, ... The Prostate 78 (12), 896-904, 2018 | 14 | 2018 |
| Single‐cell atlas of epithelial and stromal cell heterogeneity by lobe and strain in the mouse prostate MK Graham, R Chikarmane, R Wang, A Vaghasia, A Gupta, Q Zheng, ... The Prostate 83 (3), 286-303, 2023 | 6 | 2023 |
| Intravenous BCG vaccination reduces SARS-CoV-2 severity and promotes extensive reprogramming of lung immune cells AK Singh, R Wang, KA Lombardo, M Praharaj, CK Bullen, P Um, M Gupta, ... Iscience 26 (10), 2023 | 5 | 2023 |
| Identifying phased mutations and complex rearrangements in human prostate cancer cell lines through linked-read whole-genome sequencing MT Pham, A Gupta, H Gupta, A Vaghasia, A Skaist, MKA Garrison, ... Molecular Cancer Research 20 (7), 1013-1020, 2022 | 3 | 2022 |
| Retrotransposon LINE-1 bodies in the cytoplasm of piRNA-deficient mouse spermatocytes: Ribonucleoproteins overcoming the integrated stress response C De Luca, A Gupta, A Bortvin PLoS genetics 19 (6), e1010797, 2023 | 2 | 2023 |
| Convergent antibody responses are associated with broad neutralization of hepatitis C virus NE Skinner, CO Ogega, N Frumento, KE Clark, H Paul, ... Frontiers in immunology 14, 1135841, 2023 | 2 | 2023 |
| Genomic characterization of prostatic basal cell carcinoma JY Low, M Ko, B Hanratty, RA Patel, A Bhamidipati, CM Heaphy, E Sayar, ... The American Journal of Pathology 193 (1), 4-10, 2023 | 2 | 2023 |
| MYC-driven increases in mitochondrial DNA copy number occur early and persist throughout prostatic cancer progression J Chen, Q Zheng, JL Hicks, L Trabzonlu, B Ozbek, T Jones, AM Vaghasia, ... JCI insight 8 (24), 2023 | 1 | 2023 |
| Computing and plotting agreement among ranked vectors of features with matchBox. A Gupta, L Marchionni JHUS o. M. The Sidney Kimmel Comprehensive Cancer Center (Ed.), 2012 | 1 | 2012 |
| Biobanking and feasibility considerations for prostate cancer gastrointestinal microbiome studies SE Ernst, MC Markowski, A Gupta, SJ Wheelan, HB Carter, AW Partin, ... Cancer Research 78 (13_Supplement), 129-129, 2018 | | 2018 |
