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Federico Agostini
Federico Agostini
Science for Life Laboratories and Karolinska Institutet
Verified email at scilifelab.se - Homepage
Title
Cited by
Cited by
Year
DnaK functions as a central hub in the E. coli chaperone network
G Calloni, T Chen, SM Schermann, H Chang, P Genevaux, F Agostini, ...
Cell reports 1 (3), 251-264, 2012
4242012
Predicting protein associations with long noncoding RNAs
M Bellucci, F Agostini, M Masin, GG Tartaglia
Nature methods 8 (6), 444-445, 2011
3782011
catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
F Agostini, A Zanzoni, P Klus, D Marchese, D Cirillo, GG Tartaglia
Bioinformatics 29 (22), 2928-2930, 2013
2692013
Heteromeric RNP assembly at LINEs controls lineage-specific RNA processing
J Attig, F Agostini, C Gooding, AM Chakrabarti, A Singh, N Haberman, ...
Cell 174 (5), 1067-1081. e17, 2018
1362018
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ...
Nature Communications 11 (1), 1018, 2020
1262020
Sequence-based prediction of protein solubility
F Agostini, M Vendruscolo, GG Tartaglia
Journal of molecular biology 421 (2-3), 237-241, 2012
1232012
Neurodegenerative diseases: quantitative predictions of protein–RNA interactions
D Cirillo, F Agostini, P Klus, D Marchese, S Rodriguez, B Bolognesi, ...
Rna 19 (2), 129-140, 2013
812013
cc SOL omics : a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli
F Agostini, D Cirillo, CM Livi, R Delli Ponti, GG Tartaglia
Bioinformatics 30 (20), 2975-2977, 2014
772014
GPSeq reveals the radial organization of chromatin in the cell nucleus
G Girelli, J Custodio, T Kallas, F Agostini, E Wernersson, B Spanjaard, ...
Nature biotechnology 38 (10), 1184-1193, 2020
732020
Disulfide bonds reduce the toxicity of the amyloid fibrils formed by an extracellular protein
MF Mossuto, B Bolognesi, B Guixer, A Dhulesia, F Agostini, JR Kumita, ...
Angewandte Chemie 123 (31), 7186-7189, 2011
692011
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
E Gelali, G Girelli, M Matsumoto, E Wernersson, J Custodio, A Mota, ...
Nature communications 10 (1), 1636, 2019
642019
The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities
P Klus, B Bolognesi, F Agostini, D Marchese, A Zanzoni, GG Tartaglia
Bioinformatics 30 (11), 1601-1608, 2014
642014
Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
A Zanzoni, D Marchese, F Agostini, B Bolognesi, D Cirillo, M Botta-Orfila, ...
Nucleic acids research 41 (22), 9987-9998, 2013
592013
X-inactivation: quantitative predictions of protein interactions in the Xist network
F Agostini, D Cirillo, B Bolognesi, GG Tartaglia
Nucleic acids research 41 (1), e31-e31, 2013
552013
Somatic copy number alterations in human cancers: an analysis of publicly available data from the cancer genome atlas
L Harbers, F Agostini, M Nicos, D Poddighe, M Bienko, N Crosetto
Frontiers in oncology 11, 700568, 2021
522021
Recombination of repeat elements generates somatic complexity in human genomes
G Pascarella, CC Hon, K Hashimoto, A Busch, J Luginbühl, C Parr, ...
Cell 185 (16), 3025-3040. e6, 2022
452022
Constitutive patterns of gene expression regulated by RNA-binding proteins
D Cirillo, D Marchese, F Agostini, CM Livi, T Botta-Orfila, GG Tartaglia
Genome biology 15, 1-13, 2014
442014
Molecular landscape of the interaction between the urease accessory proteins UreE and UreG
A Merloni, O Dobrovolska, B Zambelli, F Agostini, M Bazzani, F Musiani, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (9), 1662-1674, 2014
402014
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS
BAM Bouwman, F Agostini, S Garnerone, G Petrosino, HJ Gothe, ...
Nature protocols 15 (12), 3894-3941, 2020
332020
SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
F Agostini, D Cirillo, RD Ponti, GG Tartaglia
BMC genomics 15, 1-9, 2014
332014
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Articles 1–20