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Sarah Killcoyne
Sarah Killcoyne
Director of R&D, Cyted Ltd
Verified email at cyted.ai - Homepage
Title
Cited by
Cited by
Year
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
27172007
Cytoscape: a community-based framework for network modeling
S Killcoyne, GW Carter, J Smith, J Boyle
Protein networks and pathway analysis, 219-239, 2009
2442009
The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic
AM Frankell, SG Jammula, X Li, G Contino, S Killcoyne, S Abbas, J Perner, ...
Nature genetics 51 (3), 506-516, 2019
1882019
Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure
KC Akdemir, VT Le, JM Kim, S Killcoyne, DA King, YP Lin, Y Tian, A Inoue, ...
Nature genetics 52 (11), 1178-1188, 2020
1032020
Genomic copy number predicts esophageal cancer years before transformation
S Killcoyne, E Gregson, DC Wedge, DJ Woodcock, MD Eldridge, ...
Nature medicine 26 (11), 1726-1732, 2020
992020
T1DBase: integration and presentation of complex data for type 1 diabetes research
EM Hulbert, LJ Smink, EC Adlem, JE Allen, DB Burdick, OS Burren, ...
932007
Identification of prognostic phenotypes of esophageal adenocarcinoma in 2 independent cohorts
T Sawas, S Killcoyne, PG Iyer, KK Wang, TC Smyrk, JB Kisiel, Y Qin, ...
Gastroenterology 155 (6), 1720-1728. e4, 2018
822018
Identification of subtypes of Barrett’s esophagus and esophageal adenocarcinoma based on DNA methylation profiles and integration of transcriptome and genome data
SG Jammula, AC Katz-Summercorn, X Li, C Linossi, E Smyth, S Killcoyne, ...
Gastroenterology 158 (6), 1682-1697. e1, 2020
752020
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework
S Lewis, A Csordas, S Killcoyne, H Hermjakob, MR Hoopmann, RL Moritz, ...
BMC bioinformatics 13, 1-6, 2012
722012
Evolution and progression of Barrett’s oesophagus to oesophageal cancer
S Killcoyne, RC Fitzgerald
Nature Reviews Cancer 21 (11), 731-741, 2021
422021
Use of a cytosponge biomarker panel to prioritise endoscopic barrett's oesophagus surveillance: a cross-sectional study followed by a real-world prospective pilot
ND Pilonis, S Killcoyne, WK Tan, M O'Donovan, S Malhotra, M Tripathi, ...
The Lancet Oncology 23 (2), 270-278, 2022
382022
Managing chaos: lessons learned developing software in the life sciences
S Killcoyne, J Boyle
Computing in science & engineering 11 (6), 20-29, 2009
372009
Systems biology driven software design for the research enterprise
J Boyle, C Cavnor, S Killcoyne, I Shmulevich
BMC bioinformatics 9, 1-15, 2008
242008
Limitations of heartburn and other societies’ criteria in Barrett’s screening for detecting de novo esophageal adenocarcinoma
T Sawas, SA Zamani, S Killcoyne, A Dullea, KK Wang, PG Iyer, ...
Clinical Gastroenterology and Hepatology 20 (8), 1709-1718, 2022
232022
SAMQA: error classification and validation of high-throughput sequenced read data
T Robinson, S Killcoyne, R Bressler, J Boyle
BMC genomics 12, 1-7, 2011
222011
Adaptable data management for systems biology investigations
J Boyle, H Rovira, C Cavnor, D Burdick, S Killcoyne, I Shmulevich
BMC bioinformatics 10, 1-16, 2009
222009
Aneuploidy in targeted endoscopic biopsies outperforms other tissue biomarkers in the prediction of histologic progression of Barrett's oesophagus: A multi-centre prospective …
AV Hadjinicolaou, SN van Munster, A Achilleos, JS Garcia, S Killcoyne, ...
EBioMedicine 56, 2020
212020
Genomic instability signals offer diagnostic possibility in early cancer detection
S Killcoyne, A Yusuf, RC Fitzgerald
Trends in Genetics 37 (11), 966-972, 2021
112021
FIGG: simulating populations of whole genome sequences for heterogeneous data analyses
S Killcoyne, A del Sol
BMC bioinformatics 15, 1-10, 2014
112014
Methods for visual mining of genomic and proteomic data atlases
J Boyle, R Kreisberg, R Bressler, S Killcoyne
BMC bioinformatics 13, 1-11, 2012
112012
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