Srinivas Aluru
Srinivas Aluru
Professor and Executive Director of Institute for Data Engineering and Science, Georgia Tech
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The B73 maize genome: complexity, diversity, and dynamics
PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ...
science 326 (5956), 1112-1115, 2009
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 1-8, 2018
A brassinosteroid transcriptional network revealed by genomewide identification of BESI target genes in Arabidopsis thaliana
X Yu, L Li, J Zola, M Aluru, H Ye, A Foudree, H Guo, S Anderson, S Aluru, ...
The Plant Journal 65 (4), 634-646, 2011
Space efficient linear time construction of suffix arrays
P Ko, S Aluru
Annual Symposium on Combinatorial Pattern Matching, 200-210, 2003
PCAP: a whole-genome assembly program
X Huang, J Wang, S Aluru, SP Yang, LD Hillier
Genome research 13 (9), 2164-2170, 2003
A survey of error-correction methods for next-generation sequencing
X Yang, SP Chockalingam, S Aluru
Briefings in bioinformatics 14 (1), 56-66, 2013
Handbook of computational molecular biology
S Aluru
CRC Press, 2005
Space efficient linear time construction of suffix arrays
P Ko, S Aluru
Journal of Discrete Algorithms 3 (2-4), 143-156, 2005
Reptile: representative tiling for short read error correction
X Yang, KS Dorman, S Aluru
Bioinformatics 26 (20), 2526-2533, 2010
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L
M Ott, J Zola, A Stamatakis, S Aluru
SC'07: Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, 1-11, 2007
Mechanisms and networks for brassinosteroid regulated gene expression
H Guo, L Li, M Aluru, S Aluru, Y Yin
Current opinion in plant biology 16 (5), 545-553, 2013
Parallel biological sequence comparison using prefix computations
S Aluru, N Futamura, K Mehrotra
Journal of Parallel and Distributed Computing 63 (3), 264-272, 2003
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways
H Ye, S Liu, B Tang, J Chen, Z Xie, TM Nolan, H Jiang, H Guo, HY Lin, ...
Nature communications 8 (1), 1-13, 2017
Space and time optimal parallel sequence alignments
S Rajko, S Aluru
IEEE Transactions on Parallel and Distributed Systems 15 (12), 1070-1081, 2004
Efficient clustering of large EST data sets on parallel computers
A Kalyanaraman, S Aluru, S Kothari, V Brendel
Nucleic Acids Research 31 (11), 2963-2974, 2003
Parallel domain decomposition and load balancing using space-filling curves
S Aluru, FE Sevilgen
Proceedings fourth international conference on high-performance computing …, 1997
Discovering motifs in biological sequences using the micron automata processor
I Roy, S Aluru
IEEE/ACM transactions on computational biology and bioinformatics 13 (1), 99-111, 2015
Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes
Y Fu, SJ Emrich, L Guo, TJ Wen, DA Ashlock, S Aluru, PS Schnable
Proceedings of the National Academy of Sciences 102 (34), 12282-12287, 2005
Identifying gene regulatory networks from gene expression data
V Filkov
A review of hardware acceleration for computational genomics
S Aluru, N Jammula
IEEE Design & Test 31 (1), 19-30, 2013
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