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Pei-Chen Peng
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Year
ChatGPT and large language models in academia: opportunities and challenges
JG Meyer, RJ Urbanowicz, PCN Martin, K O’Connor, R Li, PC Peng, ...
BioData Mining 16 (1), 20, 2023
1132023
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ...
Elife 6, e28440, 2017
462017
Comparison of feature selection methods for cross-laboratory microarray analysis
HC Liu, PC Peng, TC Hsieh, TC Yeh, CJ Lin, CY Chen, JY Hou, LY Shih, ...
IEEE/ACM transactions on computational biology and bioinformatics 10 (3 …, 2013
332013
The Role of Chromatin Accessibility in cis-Regulatory Evolution
PC Peng, P Khoueiry, C Girardot, JP Reddington, DA Garfield, ...
Genome biology and evolution 11 (7), 1813-1828, 2019
182019
Quantitative modeling of gene expression using DNA shape features of binding sites
PC Peng, S Sinha
Nucleic acids research 44 (13), e120-e120, 2016
182016
Ovarian cancer risk variants are enriched in histotype-specific enhancers and disrupt transcription factor binding sites
MR Jones, PC Peng, SG Coetzee, J Tyrer, ALP Reyes, RI Corona, ...
The American Journal of Human Genetics 107 (4), 622-635, 2020
162020
Incorporating chromatin accessibility data into sequence-to-expression modeling
PC Peng, MAH Samee, S Sinha
Biophysical journal 108 (5), 1257-1267, 2015
132015
DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers
N Gull, MR Jones, PC Peng, SG Coetzee, TC Silva, JT Plummer, ...
Journal of Experimental & Clinical Cancer Research 41 (1), 232, 2022
92022
Copy number variants are ovarian cancer risk alleles at known and novel risk loci
AA DeVries, J Dennis, JP Tyrer, PC Peng, SG Coetzee, AL Reyes, ...
JNCI: Journal of the National Cancer Institute 114 (11), 1533-1544, 2022
62022
Improving on polygenic scores across complex traits using select and shrink with summary statistics
JP Tyrer, P Peng, AA DeVries, SA Gayther, MR Jones, PD Pharoah
medRxiv, 2022.09. 13.22278911, 2022
12022
Homologous recombination repair deficiency, and not recurrence, determines mutational burden and clonal dynamics in high grade serous ovarian cancer
MA Diaz, N Gull, PC Peng, K Lawrenson, BJ Rimel, J Lester, B Karlan, ...
Cancer Research 84 (6_Supplement), 4336-4336, 2024
2024
Editorial viewpoints of scientific publishing for early-career research scientists
PC Peng, FT Coleman
BMC proceedings 18 (Suppl 1), 4, 2024
2024
Exome sequencing identifies HELB as a novel susceptibility gene for non-mucinous, non-high-grade-serous epithelial ovarian cancer
EM Dicks, JP Tyrer, S Ezquina, M Jones, J Baierl, PC Peng, M Diaz, ...
medRxiv, 2024.04. 02.24304968, 2024
2024
Large-scale genome-wide association study of 398,238 women unveils seven novel loci associated with high-grade serous epithelial ovarian cancer risk
DR Barnes, JP Tyrer, J Dennis, G Leslie, MK Bolla, M Lush, AM Aeilts, ...
medRxiv, 2024.02. 29.24303243, 2024
2024
Rare germline genetic variation in PAX8 transcription factor binding sites and susceptibility to epithelial ovarian cancer
SAM Ezquina, M Jones, E Dicks, A de Vries, PC Peng, K Lawrenson, ...
medRxiv, 2023.03. 22.23287587, 2023
2023
Ninth International Symposium on Hereditary Breast and Ovarian Cancer
N Gull, M Diaz, K Dabke, PC Peng, J Lester, K Lawrenson, S Parker, ...
2023
Quantifying the functional and evolutionary relationships among sequences, transcription factor binding and gene expression
PC Peng
University of Illinois at Urbana-Champaign, 2018
2018
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