| A mixture model for determining SARS-Cov-2 variant composition in pooled samples R Valieris, RD Drummond, A Defelicibus, E Dias-Neto, RA Rosales, ... Bioinformatics 38 (7), 1809-1815, 2022 | 32 | 2022 |
| An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ... Scientific reports 8 (1), 9939, 2018 | 23 | 2018 |
| Mature tertiary lymphoid structures are key niches of tumour-specific immune responses in pancreatic ductal adenocarcinomas GS Kinker, GAF Vitiello, AB Diniz, MP Cabral-Piccin, PHB Pereira, ... Gut 72 (10), 1927-1941, 2023 | 21 | 2023 |
| Genomics and epidemiology for gastric adenocarcinomas (GE4GAC): a Brazilian initiative to study gastric cancer GE4GAC group, TF Bartelli, LL Senda de Abrantes, HC Freitas, ... Applied Cancer Research 39, 1-4, 2019 | 9 | 2019 |
| Premature ovarian insufficiency is associated with global alterations in the regulatory landscape and gene expression in balanced X-autosome translocations A Di-Battista, BP Favilla, M Zamariolli, N Nunes, A Defelicibus, ... Epigenetics & Chromatin 16 (1), 19, 2023 | 5 | 2023 |
| Mutational signatures driven by epigenetic determinants enable the stratification of patients with gastric cancer for therapeutic intervention JR Buttura, MN Provisor Santos, R Valieris, RD Drummond, A Defelicibus, ... Cancers 13 (3), 490, 2021 | 5 | 2021 |
| Evaluation of Bacteria and Fungi DNA Abundance in Human Tissues GE de Albuquerque, BS Moda, MS Serpa, GP Branco, A Defelicibus, ... Genes 13 (2), 237, 2022 | 4 | 2022 |
| Exome and tissue-associated microbiota as predictive markers of response to neoadjuvant treatment in locally advanced rectal cancer IK Takenaka, TF Bartelli, A Defelicibus, JM Sendoya, M Golubicki, ... Frontiers in Oncology, 902, 2022 | 4 | 2022 |
| Latency-associated DNA methylation patterns among HIV-1 infected individuals with distinct disease progression courses or antiretroviral virologic response N Mantovani, A Defelicibus, IT da Silva, MF Cicero, LC Santana, R Arnold, ... Scientific Reports 11 (1), 22993, 2021 | 3 | 2021 |
| Koala: sistema para integração de métodos de predição e análise de estruturas de proteína A Defelicibus Universidade de São Paulo, 2016 | 2 | 2016 |
| Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data SG Sutcliffe, SA Kraemer, I Ellmen, JJ Knapp, AK Overton, D Nash, ... bioRxiv, 2023.12. 20.572426, 2023 | 1 | 2023 |
| First Transcriptome Analysis of Hepatoblastoma in Brazil: Unraveling the Pivotal Role of Noncoding RNAs and Metabolic Pathways TFM Aguiar, MP Rivas, EM de Andrade Silva, SF Pires, GD Dangoni, ... Biochemical Genetics, 1-34, 2024 | | 2024 |
| Germline variants in early and late-onset Brazilian prostate cancer patients KBCA Coelho, JA Squire, KG Duarte, CTG Sares, NA Moreda, JL Pereira, ... Urologic Oncology: Seminars and Original Investigations, 2024 | | 2024 |
| Relating mutational signature exposures to clinical data in cancers via signeR 2.0 RD Drummond, A Defelicibus, M Meyenberg, R Valieris, E Dias-Neto, ... BMC bioinformatics 24 (1), 439, 2023 | | 2023 |
| WSI2ML–An Open-Source Whole Slide Image Annotation Software for Machine Learning Applications LVC Martins, AP Bueno, A Defelicibus, RD Drummond, R Valieris, YT Zhu, ... Proceedings of the 29th Brazilian Symposium on Multimedia and the Web, 104-109, 2023 | | 2023 |
| Increased DNA content in stomach fluids: diagnostic implications of a possible new gastric cancer marker FC Cadoná, AG Pelosof, CZ Sztokfisz, AP Bueno, LB Carmo dos Santos, ... medRxiv, 2023.02. 14.23285919, 2023 | | 2023 |
| Mature tertiary lymphoid structures are key niches of tumour-specific immune responses in pancreatic ductal adenocarcinomas T Medina, G Kinker, G Vitiello, A Diniz, M Piccin, P Pereira, ML Carvalho, ... Galoá, 2023 | | 2023 |
| Transcriptome Dysregulation in Hepatoblastoma: The Pivotal Role of Noncoding Rnas and Changes in Lipid Metabolism MP Rivas, TFM Aguiar, EM de Andrade, SF Pires, A Defelicibus, B Barros, ... | | 2022 |
| A mixture model for determining SARS-Cov-2 variant composition in pooled samples (preprint) R Valieris, R Drummond, A Defelicibus, E Dias-Neto, RA Rosales, ... | | 2021 |
| Caracterização computacional de neoantígenos e sua implicação prognóstica A Defelicibus Fundação Antonio Prudente, 2021 | | 2021 |
