Curtis Rueden

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Johannes SchindelinVerified email at wisc.edu
Ignacio Arganda-CarrerasIkerbasque Associate Researcher at University of the Basque Country and DIPCVerified email at ehu.eus
Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Mark HinerLOCIVerified email at umn.edu
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Daniel James Whitemetrology engineer at infineonVerified email at infineon.com
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
John WhiteEmeritus professor University of wisconsin madisonVerified email at wisc.edu
Jason SwedlowProfessor of Quantitative Cell Biology, University of DundeeVerified email at dundee.ac.uk
Long YanMax Planck Florida InstituteVerified email at mpfi.org
Paolo ProvenzanoUniversity of MinnesotaVerified email at umn.edu
Anne E. CarpenterInstitute Scientist and Imaging Platform Director, Broad Institute of Harvard and MITVerified email at broadinstitute.org
Vebjorn LjosaComputational biologist, Broad Institute of MIT and HarvardVerified email at broad.mit.edu
Thouis (Ray) JonesBroad InstituteVerified email at broadinstitute.org
Mark-Anthony BrayNovartis Institutes for BioMedical ResearchVerified email at novartis.com

Curtis Rueden

University of Wisconsin-Madison

Verified email at wisc.edu

Software Architecture Image Processing Visualization Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012	50086	2012
ImageJ2: ImageJ for the next generation of scientific image data CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ... BMC bioinformatics 18, 1-26, 2017	5241	2017
The ImageJ ecosystem: An open platform for biomedical image analysis J Schindelin, CT Rueden, MC Hiner, KW Eliceiri Molecular reproduction and development 82 (7-8), 518-529, 2015	2558	2015
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	1751	2017
Collagen density promotes mammary tumor initiation and progression PP Provenzano, DR Inman, KW Eliceiri, JG Knittel, L Yan, CT Rueden, ... BMC medicine 6 (1), 1-15, 2008	1537	2008
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011	1105	2011
Metadata matters: access to image data in the real world M Linkert, CT Rueden, C Allan, JM Burel, W Moore, A Patterson, ... Journal of Cell Biology 189 (5), 777-782, 2010	939	2010
Tools for visualizing multidimensional images from living specimens KW Eliceiri, C Rueden Photochemistry and photobiology 81 (5), 1116-1122, 2005	166	2005
Visualization approaches for multidimensional biological image data CT Rueden, KW Eliceiri BioTechniques 43 (S1), S31-S36, 2007	154	2007
Assessing microscope image focus quality with deep learning SJ Yang, M Berndl, D Michael Ando, M Barch, A Narayanaswamy, ... BMC bioinformatics 19, 1-9, 2018	153	2018
Quantitating the cell: turning images into numbers with ImageJ ET Arena, CT Rueden, MC Hiner, S Wang, M Yuan, KW Eliceiri Wiley Interdisciplinary Reviews: Developmental Biology 6 (2), e260, 2017	131	2017
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis AB Schroeder, ETA Dobson, CT Rueden, P Tomancak, F Jug, KW Eliceiri Protein Science 30 (1), 234-249, 2021	101	2021
Nat Methods J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nat Methods 9 (7), 2012	81	2012
714 Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. 715 Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nat Methods 9, 676-682, 0	69
Nonlinear optical imaging and spectral-lifetime computational analysis of endogenous and exogenous fluorophores in breast cancer PP Provenzano, CT Rueden, SM Trier, L Yan, SM Ponik, DR Inman, ... Journal of Biomedical Optics 13 (3), 031220-031220-11, 2008	67	2008
VisBio: a computational tool for visualization of multidimensional biological image data C Rueden, KW Eliceiri, JG White Traffic 5 (6), 411-417, 2004	48	2004
Applications of combined spectral lifetime microscopy for biology L Yan, CT Rueden, JG White, KW Eliceiri Biotechniques 41 (3), 249-257, 2006	34	2006
Integration of the ImageJ ecosystem in Knime analytics platform C Dietz, CT Rueden, S Helfrich, ETA Dobson, M Horn, J Eglinger, ... Frontiers in computer science 2, 8, 2020	29	2020
SCIFIO: an extensible framework to support scientific image formats MC Hiner, CT Rueden, KW Eliceiri BMC bioinformatics 17 (1), 1-5, 2016	27	2016
ImageJ for the next generation of scientific image data CT Rueden, KW Eliceiri Microscopy and microanalysis 25 (S2), 142-143, 2019	26	2019

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