| Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ... Cell 183 (1), 197-210. e32, 2020 | 168 | 2020 |
| Integrated mutational landscape analysis of uterine leiomyosarcomas J Choi, A Manzano, W Dong, S Bellone, E Bonazzoli, L Zammataro, X Yao, ... Proceedings of the National Academy of Sciences 118 (15), e2025182118, 2021 | 63 | 2021 |
| Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing AS Deshpande, N Ulahannan, M Pendleton, X Dai, L Ly, JM Behr, ... Nature Biotechnology 40 (10), 1488-1499, 2022 | 58 | 2022 |
| Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure N Ulahannan, M Pendleton, A Deshpande, S Schwenk, JM Behr, X Dai, ... BioRxiv, 833590, 2019 | 39 | 2019 |
| Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ... Cell reports 34 (5), 2021 | 28 | 2021 |
| Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform A Deshpande, W Lang, T McDowell, S Sivakumar, J Zhang, J Wang, ... BMC bioinformatics 19, 1-10, 2018 | 24 | 2018 |
| Recurrent somatic mutations as predictors of immunotherapy response ZZ Gajic, A Deshpande, M Legut, M Imieliński, NE Sanjana nature communications 13 (1), 3938, 2022 | 16 | 2022 |
| Novel patterns of complex structural variation revealed across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, J Rosiene, ... BioRxiv, 836296, 2019 | 15 | 2019 |
| Ethnic disparities relative to disease features and outcomes in children with acute myeloid leukemia MM Gramatges, A Deshpande, PJ Lupo, RE Rau, ML Redell, TM Horton, ... Pediatric Blood & Cancer 64 (9), e26487, 2017 | 15 | 2017 |
| Assessing inter-component heterogeneity of biphasic uterine carcinosarcomas Y Liu, Z Weber, FA San Lucas, A Deshpande, YA Jakubek, R Sulaiman, ... Gynecologic oncology 151 (2), 243-249, 2018 | 10 | 2018 |
| Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure. bioRxiv, 833590 N Ulahannan, M Pendleton, A Deshpande, S Schwenk, JM Behr, X Dai, ... | 9 | 2019 |
| Most large structural variants in cancer genomes can be detected without long reads ZN Choo, JM Behr, A Deshpande, K Hadi, X Yao, H Tian, K Takai, ... Nature Genetics 55 (12), 2139-2148, 2023 | 8 | 2023 |
| Machine learning guided signal enrichment for ultrasensitive plasma tumor burden monitoring AJ Widman, M Shah, N Øgaard, CC Khamnei, A Frydendahl, ... bioRxiv, 2022.01. 17.476508, 2022 | 8 | 2022 |
| Robust foreground detection in somatic copy number data A Deshpande, T Walradt, Y Hu, A Koren, M Imielinski bioRxiv, 847681, 2019 | 8 | 2019 |
| Long-molecule scars of backup DNA repair in BRCA1-and BRCA2-deficient cancers J Setton, K Hadi, ZN Choo, KS Kuchin, H Tian, A Da Cruz Paula, ... Nature 621 (7977), 129-137, 2023 | 4 | 2023 |
| Loose ends in cancer genome structure JM Behr Weill Medical College of Cornell University, 2021 | 3 | 2021 |
| Optimizing the replication of cancer genomics workflows: case studies J Fowler, FAS Lucas, S Sivakumar, A Deshpande, H Kadara, PA Scheet Cancer Research 77 (13_Supplement), 2594-2594, 2017 | 2 | 2017 |
| Poorer relapse-free survival in Hispanic children diagnosed with acute myeloid leukemia compared with non-Hispanics: a Texas single institution experience A Deshpande, MM Gramatges, GS Sasa, PJ Lupo, RE Rau, MS Redell, ... Blood, The Journal of the American Society of Hematology 126 (23), 1312-1312, 2015 | 2 | 2015 |
| A whole genome sequencing classifier of homologous recombination deficiency K Hadi, G Gundem, MF Levine, A Deshpande, M Patel, S Skzrypczak, ... Cancer Research 83 (7_Supplement), 2149-2149, 2023 | 1 | 2023 |
| Enhancing Myeloid Cancer Genomic Profiling through Comprehensive Whole Genome Sequencing Using the Isabl Gxt Heme Analytical Platform AS Deshpande, MF Levine, K Hadi, G Gundem, M Patel, S Skrzypczak, ... Blood 142, 3653, 2023 | | 2023 |
Marcin ImielinskiWeill Cornell Medicine, New York Genome CenterVerified email at med.cornell.edu
