Lizhe Zhu
Lizhe Zhu
Assistant Professor @ The Chinese University of Hong Kong (Shenzhen)
Verified email at cuhk.edu.cn
Title
Cited by
Cited by
Year
Constructing Markov State Models to elucidate the functional conformational changes of complex biomolecules
W Wang, S Cao, L Zhu, X Huang
Wiley Interdisciplinary Reviews: Computational Molecular Science 6, e1343, 2017
682017
Unraveling the aggregation effect on amorphous phase AIE luminogens: a computational study
X Zheng, Q Peng, L Zhu, Y Xie, X Huang, Z Shuai
Nanoscale 8 (33), 15173-15180, 2016
672016
Markov state models reveal a two-step mechanism of miRNA loading into the human argonaute protein: selective binding followed by structural re-arrangement
H Jiang, FK Sheong, L Zhu, X Gao, J Bernauer, X Huang
PLoS computational biology 11 (7), e1004404, 2015
392015
Adaptive partitioning by local density‐peaks: An efficient density‐based clustering algorithm for analyzing molecular dynamics trajectories
S Liu, L Zhu, FK Sheong, W Wang, X Huang
Journal of computational chemistry 38 (3), 152-160, 2017
242017
Single-molecule investigations of conformation adaptation of porphyrins on surfaces
Q Zhang, X Zheng, G Kuang, W Wang, L Zhu, R Pang, X Shi, X Shang, ...
The journal of physical chemistry letters 8 (6), 1241-1247, 2017
212017
A deep learning framework to predict binding preference of RNA constituents on protein surface
JH Lam, Y Li, L Zhu, R Umarov, H Jiang, A Héliou, FK Sheong, T Liu, ...
Nature communications 10 (1), 1-13, 2019
192019
A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus
L Zhu, H Jiang, FK Sheong, X Cui, X Gao, Y Wang, X Huang
The Journal of Physical Chemistry B 120 (10), 2709-2720, 2016
172016
The HAMP signal relay domain adopts multiple conformational states through collective piston and tilt motions
L Zhu, PG Bolhuis, J Vreede
PLoS computational biology 9 (2), e1002913, 2013
162013
Elucidation of the conformational dynamics of multi-body systems by construction of Markov state models
L Zhu, FK Sheong, X Zeng, X Huang
Physical Chemistry Chemical Physics 18 (44), 30228-30235, 2016
152016
Kinetics-Controlled Amphiphile Self-Assembly Processes
X Zheng, L Zhu, X Zeng, L Meng, L Zhang, D Wang, X Huang
The journal of physical chemistry letters 8 (8), 1798-1803, 2017
142017
Role of fluctuations in ligand binding cooperativity of membrane receptors
L Zhu, D Frenkel, PG Bolhuis
Physical review letters 106 (16), 168103, 2011
112011
Cooperative action in eukaryotic gene regulation: physical properties of a viral example
M Werner, LZ Zhu, E Aurell
Physical Review E 76 (6), 061909, 2007
112007
Molecular mechanisms of RNA polymerase II transcription elongation elucidated by kinetic network models
IC Unarta, L Zhu, CKM Tse, PPH Cheung, J Yu, X Huang
Current opinion in structural biology 49, 54-62, 2018
102018
Elucidating dominant pathways of the nano-particle self-assembly process
X Zeng, B Li, Q Qiao, L Zhu, ZY Lu, X Huang
Physical Chemistry Chemical Physics 18 (34), 23494-23499, 2016
102016
Ligand recognition and allosteric regulation of DRD1-Gs signaling complexes
P Xiao, W Yan, L Gou, YN Zhong, L Kong, C Wu, X Wen, Y Yuan, S Cao, ...
Cell 184 (4), 943-956. e18, 2021
92021
Harnessing complexity in molecular self-assembly using computer simulations
X Zeng, L Zhu, X Zheng, M Cecchini, X Huang
Physical Chemistry Chemical Physics 20 (10), 6767-6776, 2018
92018
TAPS: A traveling-salesman based automated path searching method for functional conformational changes of biological macromolecules
L Zhu, FK Sheong, S Cao, S Liu, IC Unarta, X Huang
The Journal of chemical physics 150 (12), 124105, 2019
82019
Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes
L Zhu, H Jiang, FK Sheong, X Cui, Y Wang, X Gao, X Huang
Progress in biophysics and molecular biology 128, 39-46, 2017
82017
Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk
M Bratkowski, IC Unarta, L Zhu, M Shubbar, X Huang, X Liu
Journal of Biological Chemistry 293 (5), 1651-1665, 2018
72018
Path lumping: an efficient algorithm to identify metastable path channels for conformational dynamics of multi-body systems
L Meng, FK Sheong, X Zeng, L Zhu, X Huang
The Journal of chemical physics 147 (4), 044112, 2017
72017
The system can't perform the operation now. Try again later.
Articles 1–20