| MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters BR Terlouw, K Blin, JC Navarro-Munoz, NE Avalon, MG Chevrette, ... Nucleic acids research 51 (D1), D603-D610, 2023 | 329 | 2023 |
| Artificial intelligence for natural product drug discovery MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ... Nature Reviews Drug Discovery 22 (11), 895-916, 2023 | 196 | 2023 |
| Good practices and recommendations for using and benchmarking computational metabolomics metabolite annotation tools NF de Jonge, K Mildau, D Meijer, JJR Louwen, C Bueschl, F Huber, ... Metabolomics 18 (12), 103, 2022 | 72 | 2022 |
| Empowering natural product science with AI: leveraging multimodal data and knowledge graphs D Meijer, MA Beniddir, CW Coley, YM Mejri, M Öztürk, JJJ van der Hooft, ... Natural Product Reports, 2025 | 10 | 2025 |
| PARAS: high-accuracy machine-learning of substrate specificities in nonribosomal peptide synthetases BR Terlouw, C Huang, D Meijer, JDD Cediel-Becerra, ML Rothe, ... bioRxiv, 2025.01. 08.631717, 2025 | 5 | 2025 |
| Unleashing the potential of cell painting assays for compound activities and hazards prediction F Odje, D Meijer, E Von Coburg, JJJ van der Hooft, S Dunst, MH Medema, ... Frontiers in Toxicology 6, 1401036, 2024 | 5 | 2024 |
| The Minimum Information about a Tailoring Enzyme/Maturase data standard for capturing natural product biosynthesis MM Zdouc, D Meijer, F Biermann, J Holme, A Korenskaia, A Lien, ... | 4 | 2024 |
| antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation<? mode pagerangestyle?> K Blin, S Shaw, L Vader, J Szenei, ZL Reitz, HE Augustijn, ... Nucleic acids research, gkaf334, 2025 | 1 | 2025 |
| Biosynfoni: A Biosynthesis-informed and Interpretable Lightweight Molecular Fingerprint LM Nollen, D Meijer, M Sorokina, J van der Hooft | | 2025 |
| CineMol: a direct-to-SVG small molecule drawer D Meijer, M Medema, J van der Hooft | | 2024 |
| Versalign: multiple sequence aligner for arbitrary objects. D Meijer | | 2024 |
| NPClassifier predictions of COCONUT compounds LM Nollen, D Meijer, M Sorokina, JJJ Van Der Hooft Wageningen University & Research, 0 | | |
| Methylation regioselectivity prediction through machine learning E Reij, AJ van Dijk, M Medema, D Meijer | | |
| BIOSYNFONI J VAN DER HOOFT, D MEIJER, M SOROKINA | | |
| A SOFTWARE TOOL PERFORMING GRAPH MINING AND ENRICHMENT ANALYSIS ON GROUPS OF MOLECULES G Duivenvoorden, D Meijer, JJJ van der Hooft, MH Medema | | |
