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Pengning Xu
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Dynamics of strand slippage in DNA hairpins formed by CAG repeats: roles of sequence parity and trinucleotide interrupts
P Xu, F Pan, C Roland, C Sagui, K Weninger
Nucleic acids research 48 (5), 2232-2245, 2020
442020
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories
M Götz, A Barth, SSR Bohr, R Börner, J Chen, T Cordes, DA Erie, ...
Nature communications 13 (1), 5402, 2022
292022
Molecular conformations and dynamics of nucleotide repeats associated with neurodegenerative diseases: double helices and CAG hairpin loops
F Pan, Y Zhang, P Xu, VH Man, C Roland, K Weninger, C Sagui
Computational and Structural Biotechnology Journal 19, 2819-2832, 2021
132021
Structure, dynamics, and regulation of TRF1-TIN2-mediated trans-and cis-interactions on telomeric DNA
H Pan, P Kaur, R Barnes, AC Detwiler, SL Sanford, M Liu, P Xu, C Mahn, ...
Journal of Biological Chemistry 297 (3), 2021
102021
Frustration between preferred states of complementary trinucleotide repeat DNA hairpins anticorrelates with expansion disease propensity
P Xu, J Zhang, F Pan, C Mahn, C Roland, C Sagui, K Weninger
Journal of Molecular Biology 435 (10), 168086, 2023
32023
Inferring kinetic rate constants from single-molecule FRET trajectories–a blind benchmark of kinetic analysis tools
M Götz, A Barth, SSR Bohr, R Börner, J Chen, T Cordes, DA Erie, ...
bioRxiv, 2021.11. 23.469671, 2021
32021
Reply to: On the statistical foundation of a recent single molecule FRET benchmark
M Götz, A Barth, SSR Bohr, R Börner, J Chen, T Cordes, DA Erie, ...
Nature communications 15 (1), 3626, 2024
2024
Interaction between DNA mismatch repair proteins and triplet repeat DNA observed from single-molecule FRET measurements
P Xu, K Weninger
Biophysical Journal 121 (3), 209a, 2022
2022
Dynamic Slippage of Mutagenic Trinucleotide Repeat DNA Revealed by Single Molecule Fret
P Xu
North Carolina State University, 2022
2022
TIN2 facilitates TRF1-mediated trans-and cis-interactions on physiologically relevant long telomeric DNA
H Pan, P Kaur, R Barnes, Q Tang, KR Weninger, R Riehn, S Smith, ...
Biophysical Journal 120 (3), 138a, 2021
2021
Toward Single Molecule FRET Studies of DNA Mismatch Repair in Live Bacteria
P Xu, A Hensley, E Chan, KR Weninger
Biophysical Journal 116 (3), 139a, 2019
2019
Single Molecule FRET Observations of Folding for DNA Hairpins Containing Trinucleotide Repeats
P Xu, K Weninger
Biophysical Journal 114 (3), 599a, 2018
2018
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Articles 1–12