Shaoke Lou
Shaoke Lou
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Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), 2018
The real cost of sequencing: scaling computation to keep pace with data generation
P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ...
Genome biology 17 (1), 1, 2016
Xinmeng Jasmine Mu, Kevin Y Yip, Ekta Khurana, and Mark Gerstein. Funseq2: a framework for prioritizing noncoding regulatory variants in cancer
Y Fu, Z Liu, S Lou, J Bedford
Genome biology 15 (10), 1, 2014
FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Y Fu, Z Liu, S Lou, J Bedford, XJ Mu, KY Yip, E Khurana, M Gerstein
Genome biology 15 (10), 1-15, 2014
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
S Lou, HM Lee, H Qin, JW Li, Z Gao, X Liu, LL Chan, VKL Lam, WY So, ...
Genome biology 15 (7), 1-21, 2014
An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database)
SK Lou, KL Wong, M Li, PPH But, SKW Tsui, PC Shaw
BMC genomics 11 (1), 402, 2010
HBx protein of hepatitis B virus (HBV) can form complex with mitochondrial HSP60 and HSP70
SM Zhang, DC Sun, S Lou, XC Bo, Z Lu, XH Qian, SQ Wang
Archives of virology 150 (8), 1579-1590, 2005
Passenger mutations in more than 2,500 cancer genomes: Overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
Combined in vivo imaging and omics approaches reveal metabolism of icaritin and its glycosides in zebrafish larvae
ZH Li, D Alex, SO Siu, IK Chu, J Renn, C Winkler, S Lou, SKW Tsui, ...
Molecular BioSystems 7 (7), 2128-2138, 2011
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 1-11, 2020
MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions
KK Yan, S Lou, M Gerstein
PLoS computational biology 13 (7), e1005647, 2017
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping
SK Lou, B Ni, LY Lo, SKW Tsui, TF Chan, KS Leung
Bioinformatics 27 (3), 421-422, 2011
Transcriptional profiling of angiogenesis activities of calycosin in zebrafish
S Li, S Lou, BUW Lei, TF Chan, YW Kwan, SW Chan, GPH Leung, ...
Molecular BioSystems 7 (11), 3112-3121, 2011
Whole genome expression profiling of hepatitis B virus-transfected cell line reveals the potential targets of anti-HBV drugs
XR Ding, J Yang, DC Sun, SK Lou, SQ Wang
The pharmacogenomics journal 8 (1), 61-70, 2008
Microarray analysis of differentially expressed genes in mouse bone marrow tissues after ionizing radiation
JM Dai, DC Sun, RX Lin, J Yang, S Lou, SQ Wang
International journal of radiation biology 82 (7), 511-521, 2006
Integrative analysis of survival-associated gene sets in breast cancer
FS Varn, MH Ung, SK Lou, C Cheng
BMC medical genomics 8 (1), 11, 2015
TopicNet: a framework for measuring transcriptional regulatory network change
S Lou, T Li, X Kong, J Zhang, J Liu, D Lee, M Gerstein
Bioinformatics 36 (Supplement_1), i474-i481, 2020
Selection of antisense oligonucleotides based on multiple predicted target mRNA structures
X Bo, S Lou, D Sun, W Shu, J Yang, S Wang
BMC bioinformatics 7 (1), 122, 2006
AOBase: a database for antisense oligonucleotides selection and design
X Bo, S Lou, D Sun, J Yang, S Wang
Nucleic acids research 34 (suppl 1), D664-D667, 2006
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