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Austin Swafford, PhD
Austin Swafford, PhD
President, IBRA
Verified email at biomedalliance.org - Homepage
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
142132019
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
14612018
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
7992020
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6592018
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
5252018
Thermal ablation of tumor cells with antibody-functionalized single-walled carbon nanotubes
P Chakravarty, R Marches, NS Zimmerman, ADE Swafford, P Bajaj, ...
Proceedings of the National Academy of Sciences 105 (25), 8697-8702, 2008
4582008
Age-and sex-dependent patterns of gut microbial diversity in human adults
J de la Cuesta-Zuluaga, ST Kelley, Y Chen, JS Escobar, NT Mueller, ...
Msystems 4 (4), 10.1128/msystems. 00261-19, 2019
2492019
Inhibition of DYRK1A and GSK3B induces human β-cell proliferation
W Shen, B Taylor, Q Jin, V Nguyen-Tran, S Meeusen, YQ Zhang, ...
Nature communications 6 (1), 8372, 2015
2192015
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1952020
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions
L Narunsky-Haziza, GD Sepich-Poore, I Livyatan, O Asraf, C Martino, ...
Cell 185 (20), 3789-3806. e17, 2022
1892022
Human skin, oral, and gut microbiomes predict chronological age
S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ...
Msystems 5 (1), 10.1128/msystems. 00630-19, 2020
912020
Impacts of the human gut microbiome on therapeutics
Y Vázquez-Baeza, C Callewaert, J Debelius, E Hyde, C Marotz, JT Morton, ...
Annual review of pharmacology and toxicology 58, 253-270, 2018
872018
Differential activation of hepatic invariant NKT cell subsets plays a key role in progression of nonalcoholic steatohepatitis
I Maricic, I Marrero, A Eguchi, R Nakamura, CD Johnson, S Dasgupta, ...
The Journal of Immunology 201 (10), 3017-3035, 2018
812018
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ...
Nature biotechnology 39 (2), 165-168, 2021
732021
An allele of IKZF1 (Ikaros) conferring susceptibility to childhood acute lymphoblastic leukemia protects against type 1 diabetes
ADE Swafford, JMM Howson, LJ Davison, C Wallace, DJ Smyth, ...
Diabetes 60 (3), 1041-1044, 2011
612011
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ...
Nature microbiology 7 (12), 2128-2150, 2022
60*2022
Gut microbiome in Schizophrenia: altered functional pathways related to immune modulation and atherosclerotic risk
TT Nguyen, T Kosciolek, RE Daly, Y Vázquez-Baeza, A Swafford, ...
Brain, behavior, and immunity 91, 245-256, 2021
512021
High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity
JJ Minich, G Humphrey, RAS Benitez, J Sanders, A Swafford, EE Allen, ...
Msystems 3 (6), 10.1128/msystems. 00166-18, 2018
51*2018
High-resolution longitudinal dynamics of the cystic fibrosis sputum microbiome and metabolome through antibiotic therapy
R Raghuvanshi, K Vasco, Y Vázquez-Baeza, L Jiang, JT Morton, D Li, ...
Msystems 5 (3), 10.1128/msystems. 00292-20, 2020
472020
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
Biotechniques 70 (3), 149-159, 2021
46*2021
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Articles 1–20