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Hamidreza Chitsaz
Hamidreza Chitsaz
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Verified email at algorithmicslab.org - Homepage
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Cited by
Year
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7982013
Time-optimal paths for a Dubins airplane
H Chitsaz, SM LaValle
2007 46th IEEE conference on decision and control, 2379-2384, 2007
3372007
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
H Chitsaz, JL Yee-Greenbaum, G Tesler, MJ Lombardo, CL Dupont, ...
Nature biotechnology 29 (10), 915-921, 2011
2552011
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ...
Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013
1922013
Minimum Wheel-Rotation Paths for Differential-Drive Mobile Robots Among Piecewise Smooth Obstacles
H Chitsaz, SM LaValle
IEEE Conference on Robotics and Automation (ICRA), 2718 - 2723, 2007
151*2007
Minimum wheel-rotation paths for differential-drive mobile robots
H Chitsaz, SM LaValle, DJ Balkcom, MT Mason
Robotics and Automation, 2006. ICRA 2006. Proceedings 2006 IEEE …, 2006
1442006
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ...
BMC genomics 18, 1-21, 2017
1312017
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
M Embree, H Nagarajan, N Movahedi, H Chitsaz, K Zengler
The ISME journal 8 (4), 757-767, 2014
1302014
A partition function algorithm for interacting nucleic acid strands
H Chitsaz, R Salari, SC Sahinalp, R Backofen
Bioinformatics 25 (12), i365-i373, 2009
1302009
SEQuel: improving the accuracy of genome assemblies
R Ronen, C Boucher, H Chitsaz, P Pevzner
Bioinformatics 28 (12), i188-i196, 2012
802012
A fast vision system for middle size robots in robocup
M Jamzad, BS Sadjad, VS Mirrokni, M Kazemi, H Chitsaz, A Heydarnoori, ...
RoboCup 2001: Robot Soccer World Cup V 5, 71-80, 2002
692002
Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase
R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ...
Scientific reports 7 (1), 3666, 2017
442017
De novo co-assembly of bacterial genomes from multiple single cells
NS Movahedi, E Forouzmand, H Chitsaz
2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-5, 2012
412012
biRNA: Fast RNA-RNA binding sites prediction
H Chitsaz, R Backofen, SC Sahinalp
Algorithms in Bioinformatics: 9th International Workshop, WABI 2009 …, 2009
402009
DeePathology: deep multi-task learning for inferring molecular pathology from cancer transcriptome
B Azarkhalili, A Saberi, H Chitsaz, A Sharifi-Zarchi
Scientific reports 9 (1), 16526, 2019
372019
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ...
Zoological letters 4, 1-12, 2018
352018
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature
B Bokharaeian, A Diaz, N Taghizadeh, H Chitsaz, R Chavoshinejad
Journal of biomedical semantics 8, 1-13, 2017
292017
Exact Pareto-Optimal Coordination of Two Translating Polygonal Robots on a Cyclic Roadmap
H Chitsaz, SM LaValle, JM O'Kane
20th Canadian Conference on Computational Geometry (CCCG), 2008
27*2008
Cell identity codes: understanding cell identity from gene expression profiles using deep neural networks
F Abdolhosseini, B Azarkhalili, A Maazallahi, A Kamal, SA Motahari, ...
Scientific reports 9 (1), 2342, 2019
202019
Generalizing the Dubins and Reeds-Shepp cars: fastest paths for bounded-velocity mobile robots
AA Furtuna, DJ Balkcom, H Chitsaz, P Kavathekar
2008 IEEE international conference on robotics and automation, 2533-2539, 2008
192008
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