Amit Deshwar
Amit Deshwar
Verified email at utoronto.ca
Title
Cited by
Cited by
Year
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
3672020
PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
AG Deshwar, S Vembu, CK Yung, GH Jang, L Stein, Q Morris
Genome biology 16 (1), 1-20, 2015
3112015
Inferring clonal evolution of tumors from single nucleotide somatic mutations
W Jiao, S Vembu, AG Deshwar, L Stein, Q Morris
BMC bioinformatics 15 (1), 1-16, 2014
2322014
Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
G Quon, S Haider, AG Deshwar, A Cui, PC Boutros, Q Morris
Genome medicine 5 (3), 1-20, 2013
872013
Correction of a splicing defect in a mouse model of congenital muscular dystrophy type 1A using a homology-directed-repair-independent mechanism
DU Kemaladewi, E Maino, E Hyatt, H Hou, M Ding, KM Place, X Zhu, ...
Nature medicine 23 (8), 984-989, 2017
672017
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
Nature biotechnology 38 (1), 97-107, 2020
372020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
332021
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
312018
COSSMO: predicting competitive alternative splice site selection using deep learning
H Bretschneider, S Gandhi, AG Deshwar, K Zuberi, BJ Frey
Bioinformatics 34 (13), i429-i437, 2018
282018
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles
CV Anghel, G Quon, S Haider, F Nguyen, AG Deshwar, QD Morris, ...
BMC bioinformatics 16 (1), 1-11, 2015
262015
PLIDA: cross-platform gene expression normalization using perturbed topic models
AG Deshwar, Q Morris
Bioinformatics 30 (7), 956-961, 2014
222014
A practical guide to cancer subclonal reconstruction from DNA sequencing
M Tarabichi, A Salcedo, AG Deshwar, MN Leathlobhair, J Wintersinger, ...
Nature methods 18 (2), 144-155, 2021
202021
Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ...
Nature communications 11 (1), 1-12, 2020
162020
Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression
AM Mezlini, B Wang, A Deshwar, Q Morris, A Goldenberg
PloS one 8 (10), e73168, 2013
142013
TrackSig: reconstructing evolutionary trajectories of mutations in cancer
Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ...
BioRxiv, 260471, 2019
82019
Pan-cancer analysis of whole genomes.
S Hirano, L Yang, M Juul, CA Purdie, BP O'Neill, R Kabbe, ...
Nature 578 (DKFZ-2020-01051), 82-93, 2020
72020
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors
AG Deshwar, S Vembu, CK Yung, GH Jang, L Stein, Q Morris
arXiv preprint arXiv:1406.7250, 2014
72014
Relapsing-remitting multiple sclerosis classification using elastic net logistic regression on gene expression data
C Zhao, AG Deshwar, Q Morris
Systems Biomedicine 1 (4), 247-253, 2013
72013
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13 Supplement), 3000-3000, 2018
52018
Creating standards for evaluating tumour subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
bioRxiv, 310425, 2019
42019
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Articles 1–20