The khmer software package: enabling efficient nucleotide sequence analysis MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... F1000Research 4, 2015 | 364 | 2015 |
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020 | 188 | 2020 |
Skittle: a 2-dimensional genome visualization tool JD Seaman, JC Sanford BMC bioinformatics 10 (1), 452, 2009 | 19 | 2009 |
A high‐quality reference genome for Fraxinus pennsylvanica for ash species restoration and research M Huff, J Seaman, D Wu, T Zhebentyayeva, LJ Kelly, N Faridi, CD Nelson, ... Molecular ecology resources 22 (4), 1284-1302, 2022 | 16 | 2022 |
FluentDNA: Nucleotide visualization of whole genomes, annotations, and alignments J Seaman, RJA Buggs Frontiers in genetics 11, 292, 2020 | 5 | 2020 |
Semantic Variation Graphs: Ontologies for Pangenome Graphs TT Yokoyama, S Heumos, J Seaman, D Trybushnyi, T Pook, A Guarracino, ... International Conference on Intelligent Systems for Molecular Biology (2020 …, 2020 | 2 | 2020 |
Semantic Variation Graphs: Ontologies for Pangenome Graphs JT Bolleman, TT Yokoyama, S Heumos, J Seaman, D Trybushnyi, T Pook, ... International Conference on Intelligent Systems for Molecular Biology (2020 …, 2020 | 1 | 2020 |
Simulating Foot-and-Mouth Disease in the United States using the Animal Disease Spread Model M Schoenbaum, D Assefa, L Holmstrom, A Delgado, J Seaman, F Collins, ... | 1 | |
A high‐quality reference genome for Fraxinus pennsylvanica for ash species restoration and research J Koch | | 2022 |
Visualization Tools for Comparative Genomics applied to Convergent Evolution in Ash Trees J Seaman Queen Mary University of London, 2021 | | 2021 |
Pantograph: Scalable Interactive Graph Genome Visualization J Seaman, S Heumos, A Guarracino, A Tarasov, B Munyoki, C Seaman, ... | | |