| Bio-Docklets: virtualization containers for single-step execution of NGS pipelines B Kim, T Ali, C Lijeron, E Afgan, K Krampis Gigascience 6 (8), gix048, 2017 | 23 | 2017 |
| MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs SM Brown, H Chen, Y Hao, BP Laungani, TA Ali, C Dong, C Lijeron, ... GigaScience 8 (4), giz020, 2019 | 15 | 2019 |
| Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization B Kim, T Ali, S Hosmer, K Krampis Bioinformatics 32 (13), 2050-2052, 2016 | 11 | 2016 |
| miCloud: A Plug-n-Play, Extensible, On-Premises Bioinformatics Cloud for Seamless Execution of Complex Next-Generation Sequencing Data Analysis Pipelines B Kim, T Ali, C Dong, C Lijeron, R Mazumder, C Wultsch, K Krampis Journal of Computational Biology 26 (3), 280-284, 2019 | 1 | 2019 |
| Fast functional annotation of metagenomic shotgun data by DNA alignment to a microbial gene catalog SM Brown, Y Hao, H Chen, BP Laungani, TA Ali, C Dong, C Lijeron, ... bioRxiv, 120402, 2017 | 1 | 2017 |
| Implementation of a Reproducible, Accessible and Transparent RNA-seq Bioinformatics Pipeline within the Galaxy Platform T Ali, B Kim, C Lijeron, C Dong, C Wultsch J Comput Sci Syst Biol 11, 195-199, 2018 | | 2018 |
| TED toolkit: a comprehensive approach for convenient transcriptomic profiling as a clinically-oriented application T Ali, B Kim, C Lijeron, OO Ogunwobi, R Mazumder, K Krampis PeerJ Preprints, 2017 | | 2017 |
| miCloud: a plug and play, on-premises bioinformatics cloud, providing seamless integration with Illumina genome sequencers B Kim, T Ali, K Krampis, C Dong, B Laungani, C Wultsch, C Lijeron bioRxiv, 209734, 2017 | | 2017 |
