|Wisdom of crowds for robust gene network inference|
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
|HIV-1 persistence in CD4+ T cells with stem cell–like properties|
MJ Buzon, H Sun, C Li, A Shaw, K Seiss, Z Ouyang, E Martin-Gayo, ...
Nature medicine 20 (2), 139-142, 2014
|Long-term antiretroviral treatment initiated at primary HIV-1 infection affects the size, composition, and decay kinetics of the reservoir of HIV-1-infected CD4 T cells|
MJ Buzon, E Martin-Gayo, F Pereyra, Z Ouyang, H Sun, JZ Li, M Piovoso, ...
Journal of virology 88 (17), 10056-10065, 2014
|Clonal expansion of genome-intact HIV-1 in functionally polarized Th1 CD4+ T cells|
GQ Lee, N Orlova-Fink, K Einkauf, FZ Chowdhury, X Sun, S Harrington, ...
The Journal of clinical investigation 127 (7), 2689-2696, 2017
|Fingerprint matching using ridges|
J Feng, Z Ouyang, A Cai
Pattern Recognition 39 (11), 2131-2140, 2006
|Th1/17 polarization of CD4 T cells supports HIV-1 persistence during antiretroviral therapy|
H Sun, D Kim, X Li, M Kiselinova, Z Ouyang, L Vandekerckhove, H Shang, ...
Journal of virology 89 (22), 11284-11293, 2015
|Innate immune activity correlates with CD4 T cell-associated HIV-1 DNA decline during latency-reversing treatment with panobinostat|
R Olesen, S Vigano, TA Rasmussen, OS Søgaard, Z Ouyang, M Buzon, ...
Journal of virology 89 (20), 10176-10189, 2015
|Potent cell-intrinsic immune responses in dendritic cells facilitate HIV-1-specific T cell immunity in HIV-1 elite controllers|
E Martin-Gayo, MJ Buzon, Z Ouyang, T Hickman, J Cronin, D Pimenova, ...
PLoS Pathog 11 (6), e1004930, 2015
|Anti-apoptotic protein BIRC5 maintains survival of HIV-1-infected CD4+ T cells|
HH Kuo, R Ahmad, GQ Lee, C Gao, HR Chen, Z Ouyang, MJ Szucs, ...
Immunity 48 (6), 1183-1194. e5, 2018
|Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity|
M Sakai, TD Troutman, JS Seidman, Z Ouyang, NJ Spann, Y Abe, KM Ego, ...
Immunity 51 (4), 655-670. e8, 2019
|Circulating CXCR5+ CXCR3+ PD-1lo Tfh-like cells in HIV-1 controllers with neutralizing antibody breadth|
E Martin-Gayo, J Cronin, T Hickman, Z Ouyang, M Lindqvist, KE Kolb, ...
JCI insight 2 (2), 2017
|Transcriptional changes during naturally acquired Zika virus infection render dendritic cells highly conducive to viral replication|
X Sun, S Hua, HR Chen, Z Ouyang, K Einkauf, S Tse, K Ard, A Ciaranello, ...
Cell reports 21 (12), 3471-3482, 2017
|Prolonged antiretroviral therapy preserves HIV-1-specific CD8 T cells with stem cell-like properties|
S Vigano, J Negron, Z Ouyang, ES Rosenberg, BD Walker, M Lichterfeld, ...
Journal of virology 89 (15), 7829-7840, 2015
|Fingerprint matching with rotation-descriptor texture features|
Z Ouyang, J Feng, F Su, A Cai
18th International Conference on Pattern Recognition (ICPR'06) 4, 417-420, 2006
|Discrete dynamical system modelling for gene regulatory networks of 5-hydroxymethylfurfural tolerance for ethanologenic yeast|
M Song, Z Ouyang, ZL Liu
IET systems biology 3 (3), 203-218, 2009
|Susceptibility to CD8 T cell-mediated killing influences the reservoir of latently HIV-1 infected CD4 T cells|
MJ Buzon, Y Yang, Z Ouyang, H Sun, K Seiss, J Rogich, S Le Gall, ...
Journal of acquired immune deficiency syndromes (1999) 65 (1), 1, 2014
|CbGRiTS: cerebellar gene regulation in time and space|
T Ha, D Swanson, M Larouche, R Glenn, D Weeden, P Zhang, K Hamre, ...
Developmental biology 397 (1), 18-30, 2015
|A reproducibility-based computational framework identifies an inducible, enhanced antiviral state in dendritic cells from HIV-1 elite controllers|
E Martin-Gayo, MB Cole, KE Kolb, Z Ouyang, J Cronin, SW Kazer, ...
Genome biology 19 (1), 1-21, 2018
|Metabolic pathway activation distinguish transcriptional signatures of CD8+ T cells from HIV-1 elite controllers|
FZ Chowdhury, Z Ouyang, M Buzon, BD Walker, M Lichterfeld
AIDS (London, England) 32 (18), 2669, 2018
|Conserved and differential gene interactions in dynamical biological systems|
Z Ouyang, M Song, R Güth, TJ Ha, M Larouche, D Goldowitz
Bioinformatics 27 (20), 2851-2858, 2011