Genome-scale algorithm design V Mäkinen, D Belazzougui, F Cunial, AI Tomescu Cambridge University Press, 2015 | 146 | 2015 |
Composite repetition-aware data structures D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot Annual Symposium on Combinatorial Pattern Matching, 26-39, 2015 | 73 | 2015 |
Versatile succinct representations of the bidirectional Burrows-Wheeler transform D Belazzougui, F Cunial, J Kärkkäinen, V Mäkinen European Symposium on Algorithms, 133-144, 2013 | 61 | 2013 |
Linear-time string indexing and analysis in small space D Belazzougui, F Cunial, J Kärkkäinen, V Mäkinen ACM Transactions on Algorithms (TALG) 16 (2), 1-54, 2020 | 38 | 2020 |
Representing the suffix tree with the CDAWG D Belazzougui, F Cunial 28th Annual Symposium on Combinatorial Pattern Matching 78, 7:1--7:13, 2017 | 30 | 2017 |
Fast label extraction in the CDAWG D Belazzougui, F Cunial International Symposium on String Processing and Information Retrieval, 161-175, 2017 | 22 | 2017 |
LAF: logic alignment free and its application to bacterial genomes classification E Weitschek, F Cunial, G Felici BioData mining 8 (1), 39, 2015 | 20 | 2015 |
Indexed matching statistics and shortest unique substrings D Belazzougui, F Cunial International Symposium on String Processing and Information Retrieval, 179-190, 2014 | 19 | 2014 |
A framework for space-efficient string kernels D Belazzougui, F Cunial Algorithmica 79 (3), 857-883, 2017 | 15 | 2017 |
Fully-functional bidirectional Burrows-Wheeler indexes and infinite-order de Bruijn graphs D Belazzougui, F Cunial 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019), 2019 | 11 | 2019 |
A framework for space-efficient variable-order Markov models F Cunial, J Alanko, D Belazzougui Bioinformatics 35 (22), 4607-4616, 2019 | 10* | 2019 |
Fast matching statistics in small space D Belazzougui, F Cunial, O Denas 17th International Symposium on Experimental Algorithms (SEA 2018) 103, 2018 | 9 | 2018 |
Flexible indexing of repetitive collections D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot Conference on Computability in Europe, 162-174, 2017 | 8 | 2017 |
A framework for space-efficient read clustering in metagenomic samples J Alanko, F Cunial, D Belazzougui, V Mäkinen BMC Bioinformatics 18 (3), 59, 2017 | 8 | 2017 |
Space-efficient detection of unusual words D Belazzougui, F Cunial International Symposium on String Processing and Information Retrieval, 222-233, 2015 | 8 | 2015 |
A framework for space-efficient string kernels D Belazzougui, F Cunial Annual Symposium on Combinatorial Pattern Matching, 13-25, 2015 | 8 | 2015 |
Table compression by record intersections A Apostolico, F Cunial, V Kaul Data Compression Conference (dcc 2008), 13-22, 2008 | 8 | 2008 |
Sequence similarity by gapped LZW A Apostolico, F Cunial 2011 Data Compression Conference, 343-352, 2011 | 6 | 2011 |
Phylogeny construction with rigid gapped motifs F Cunial, A Apostolico Journal of Computational Biology 19 (7), 911-927, 2012 | 5 | 2012 |
Classifying bacterial genomes with compact logic formulas on k-Mer frequencies E Weitschek, F Cunial, G Felici 2014 25th International Workshop on Database and Expert Systems Applications …, 2014 | 4 | 2014 |