Serafim Batzoglou
Serafim Batzoglou
Seer
Verified email at seer.bio
Title
Cited by
Cited by
Year
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Macmillan Publishers Ltd., 2001
272312001
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
125572012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
54732007
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, L Pachter
Nature 428 (6982), 493-521, 2004
22852004
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
20472007
The ENCODE(ENCyclopedia Of DNA Elements) Project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science(Washington) 306 (5696), 636-40, 2004
1863*2004
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
17182012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
14742012
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
JE Galagan, SE Calvo, C Cuomo, LJ Ma, JR Wortman, S Batzoglou, ...
Nature 438 (7071), 1105-1115, 2005
14602005
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do, MSP Mahabhashyam, M Brudno, S Batzoglou
Genome research 15 (2), 330-340, 2005
13632005
Distribution and intensity of constraint in mammalian genomic sequence
GM Cooper, EA Stone, G Asimenos, ED Green, S Batzoglou, A Sidow
Genome research 15 (7), 901-913, 2005
13382005
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS computational biology 6 (12), e1001025, 2010
13252010
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
12662011
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, ...
Genome research 13 (4), 721-731, 2003
12482003
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
A Valouev, DS Johnson, A Sundquist, C Medina, E Anton, S Batzoglou, ...
Nature methods 5 (9), 829-834, 2008
8612008
Linking disease associations with regulatory information in the human genome
MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder
Genome research 22 (9), 1748-1759, 2012
7392012
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
7342002
What is the expectation maximization algorithm?
CB Do, S Batzoglou
Nature biotechnology 26 (8), 897-899, 2008
5812008
CONTRAfold: RNA secondary structure prediction without physics-based models
CB Do, DA Woods, S Batzoglou
Bioinformatics 22 (14), e90-e98, 2006
5382006
Multiple sequence alignment
RC Edgar, S Batzoglou
Current opinion in structural biology 16 (3), 368-373, 2006
5372006
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