| Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014 | 2186 | 2014 |
| Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood SA Berger, D Krompass, A Stamatakis Systematic biology 60 (3), 291, 2011 | 485 | 2011 |
| Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013 | 459 | 2013 |
| Aligning short reads to reference alignments and trees SA Berger, A Stamatakis Bioinformatics 27 (15), 2068-2075, 2011 | 194 | 2011 |
| RAxML-Light: a tool for computing terabyte phylogenies A Stamatakis, AJ Aberer, C Goll, SA Smith, SA Berger, ... Bioinformatics 28 (15), 2064-2066, 2012 | 152 | 2012 |
| MLTreeMap-accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies M Stark, SA Berger, A Stamatakis, C von Mering BMC genomics 11, 1-11, 2010 | 141 | 2010 |
| Efficient pc-fpga communication over gigabit ethernet N Alachiotis, SA Berger, A Stamatakis 2010 10th IEEE International Conference on Computer and Information …, 2010 | 105 | 2010 |
| Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context M Dunthorn, J Otto, SA Berger, A Stamatakis, F Mahé, S Romac, ... Molecular biology and evolution 31 (4), 993-1009, 2014 | 97 | 2014 |
| Accuracy of morphology-based phylogenetic fossil placement under maximum likelihood SA Berger, A Stamatakis ACS/IEEE International Conference on Computer Systems and Applications …, 2010 | 39 | 2010 |
| Multiple ITS Haplotypes in the Genome of the Lichenized Basidiomycete Cora inversa (Hygrophoraceae): Fact or Artifact? R Lücking, JD Lawrey, PM Gillevet, M Sikaroodi, M Dal-Forno, SA Berger Journal of Molecular Evolution 78, 148-162, 2014 | 37 | 2014 |
| A versatile UDP/IP based PC↔ FPGA communication platform N Alachiotis, SA Berger, A Stamatakis 2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012 | 30 | 2012 |
| A generic vectorization scheme and a GPU kernel for the phylogenetic likelihood library F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ... 2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013 | 24 | 2013 |
| PaPaRa 2.0: a vectorized algorithm for probabilistic phylogeny-aware alignment extension SA Berger, A Stamatakis Heidelberg Institute for Theoretical Studies 12, 2012 | 24 | 2012 |
| Morphology‐based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration SA Berger, A Stamatakis, R Lücking Taxon 60 (5), 1450-1457, 2011 | 22 | 2011 |
| Accuracy and performance of single versus double precision arithmetics for maximum likelihood phylogeny reconstruction SA Berger, A Stamatakis Parallel Processing and Applied Mathematics: 8th International Conference …, 2010 | 22 | 2010 |
| Accelerating phylogeny-aware short DNA read alignment with FPGAs N Alachiotis, SA Berger, A Stamatakis 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011 | 21 | 2011 |
| Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel N Alachiotis, SA Berger, A Stamatakis BMC bioinformatics 13 (1), 1-12, 2012 | 20 | 2012 |
| Hyperfine clock transitions of bismuth donors in silicon detected by spin-dependent recombination PA Mortemousque, S Berger, T Sekiguchi, C Culan, RG Elliman, KM Itoh Physical Review B 89 (15), 155202, 2014 | 18 | 2014 |
| Parallel structural graph clustering M Seeland, SA Berger, A Stamatakis, S Kramer Machine Learning and Knowledge Discovery in Databases: European Conference …, 2011 | 16 | 2011 |
| Evolutionary placement of short sequence reads on multi-core architectures A Stamatakis, Z Komornik, SA Berger ACS/IEEE International Conference on Computer Systems and Applications …, 2010 | 12 | 2010 |
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
