|A human gut microbial gene catalogue established by metagenomic sequencing|
J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ...
nature 464 (7285), 59, 2010
|SOAP2: an improved ultrafast tool for short read alignment|
R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang
Bioinformatics 25 (15), 1966-1967, 2009
|SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler|
R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ...
Gigascience 1 (1), 18, 2012
|The sequence and de novo assembly of the giant panda genome|
R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ...
Nature 463 (7279), 311, 2010
|The diploid genome sequence of an Asian individual|
J Wang, W Wang, R Li, Y Li, G Tian, L Goodman, W Fan, J Zhang, J Li, ...
Nature 456 (7218), 60, 2008
|Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes|
X Xu, X Liu, S Ge, JD Jensen, F Hu, X Li, Y Dong, RN Gutenkunst, L Fang, ...
Nature biotechnology, 2011
|Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm|
Y Hou, L Song, P Zhu, B Zhang, Y Tao, X Xu, F Li, K Wu, J Liang, D Shao, ...
Cell 148 (5), 873-885, 2012
|Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx)|
Q Xia, Y Guo, Z Zhang, D Li, Z Xuan, Z Li, F Dai, Y Li, D Cheng, R Li, ...
Science 326 (5951), 433-436, 2009
|Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants|
Y Li, N Vinckenbosch, G Tian, E Huerta-Sanchez, T Jiang, H Jiang, ...
Nature genetics 42 (11), 969, 2010
|The DNA methylome of human peripheral blood mononuclear cells|
Y Li, J Zhu, G Tian, N Li, Q Li, M Ye, H Zheng, J Yu, H Wu, J Sun, H Zhang, ...
PLoS biology 8 (11), e1000533, 2010
|Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis|
Y Cui, C Yu, Y Yan, D Li, Y Li, T Jombart, LA Weinert, Z Wang, Z Guo, ...
Proceedings of the National Academy of Sciences 110 (2), 577-582, 2013
|SOAP3: ultra-fast GPU-based parallel alignment tool for short reads|
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics 28 (6), 878-879, 2012
|Novel recurrently mutated genes and a prognostic mutation signature in colorectal cancer|
J Yu, WKK Wu, X Li, J He, XX Li, SSM Ng, C Yu, Z Gao, J Yang, M Li, ...
Gut, gutjnl-2013-306620, 2014
|Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression|
X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang, X Zheng, H Zhang, ...
BMC genomics 13 (1), 300, 2012
|Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones|
K Suzuki, C Yu, J Qu, M Li, X Yao, T Yuan, A Goebl, S Tang, R Ren, ...
Cell stem cell 15 (1), 31-36, 2014
|Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes|
A Albrechtsen, N Grarup, Y Li, T Sparsų, G Tian, H Cao, T Jiang, SY Kim, ...
Diabetologia, 1-13, 2012
|SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner|
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
|SOAPnuke: A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data|
Y Chen, Y Chen, C Shi, Z Huang, Y Zhang, S Li, Y Li, J Ye, C Yu, Z Li, ...
|Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing|
C Yu, J Yu, X Yao, WKK Wu, Y Lu, S Tang, X Li, L Bao, X Li, Y Hou, R Wu, ...
Cell research 24 (6), 701, 2014
|Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer|
Y Li, X Xu, L Song, Y Hou, Z Li, S Tsang, F Li, KMG Im, K Wu, H Wu, X Ye, ...