| Fast mapping of short sequences with mismatches, insertions and deletions using index structures S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ... PLoS computational biology 5 (9), e1000502, 2009 | 635 | 2009 |
| Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann Genome research 26 (2), 256-262, 2016 | 299 | 2016 |
| A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ... Genome biology 15, 1-11, 2014 | 286 | 2014 |
| DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ... Nature genetics 47 (11), 1316-1325, 2015 | 143 | 2015 |
| Evolution of the let-7 microRNA Family J Hertel, S Bartschat, A Wintsche, C Otto, PF Stadler RNA biology 9 (3), 231-241, 2012 | 129 | 2012 |
| Lacking alignments? The next-generation sequencing mapper segemehl revisited C Otto, PF Stadler, S Hoffmann Bioinformatics 30 (13), 1837-1843, 2014 | 126 | 2014 |
| Fast and sensitive mapping of bisulfite-treated sequencing data C Otto, PF Stadler, S Hoffmann Bioinformatics 28 (13), 1698-1704, 2012 | 75 | 2012 |
| Novel modes of RNA editing in mitochondria S Moreira, M Valach, M Aoulad-Aissa, C Otto, G Burger Nucleic Acids Research 44 (10), 4907-4919, 2016 | 60 | 2016 |
| Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs J Hackermüller, K Reiche, C Otto, N Hösler, C Blumert, K Brocke-Heidrich, ... Genome biology 15, 1-23, 2014 | 53 | 2014 |
| A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus L Rivarola‐Duarte, C Otto, F Jühling, S Schreiber, D Bedulina, L Jakob, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2014 | 34 | 2014 |
| Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods P Drozdova, L Rivarola-Duarte, D Bedulina, D Axenov-Gribanov, ... BMC genomics 20, 1-14, 2019 | 21 | 2019 |
| Fast local fragment chaining using sum-of-pair gap costs. C Otto, S Hoffmann, J Gorodkin, PF Stadler Algorithms for Molecular Biology 6, 4, 2011 | 21 | 2011 |
| Detection of differentially expressed segments in tiling array data C Otto, K Reiche, J Hackermüller Bioinformatics 28 (11), 1471-1479, 2012 | 16 | 2012 |
| BAT: Bisulfite Analysis Toolkit: BAT is a toolkit to analyze DNA methylation sequencing data accurately and reproducibly. It covers standard processing and analysis steps from … H Kretzmer, C Otto, S Hoffmann F1000Research 6, 2017 | 14 | 2017 |
| Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species Z Shatilina, P Drozdova, D Bedulina, L Rivarola-Duarte, S Schreiber, ... Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 33 …, 2020 | 6 | 2020 |
| BAT: BISULFITE ANALYSIS TOOLKIT S HOFFMANN, H KRETZMER, C OTTO F1000RESEARCH 6, 1490, 2017 | | 2017 |
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
