Stefan Schoenfelder
Stefan Schoenfelder
Group Leader at the Babraham Institute
Verified email at - Homepage
Cited by
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Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
T Nagano, Y Lubling, TJ Stevens, S Schoenfelder, E Yaffe, W Dean, ...
Nature 502 (7469), 59-64, 2013
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
B Mifsud, F Tavares-Cadete, AN Young, R Sugar, S Schoenfelder, ...
Nature genetics 47 (6), 598-606, 2015
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
S Schoenfelder, T Sexton, L Chakalova, NF Cope, A Horton, S Andrews, ...
Nature genetics 42 (1), 53-61, 2010
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
G Wutz, C Várnai, K Nagasaka, DA Cisneros, RR Stocsits, W Tang, ...
The EMBO journal 36 (24), 3573-3599, 2017
Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser
Nature Reviews Genetics 20 (8), 437-455, 2019
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
S Schoenfelder, M Furlan-Magaril, B Mifsud, F Tavares-Cadete, R Sugar, ...
Genome research 25 (4), 582-597, 2015
HiCUP: pipeline for mapping and processing Hi-C data
S Wingett, P Ewels, M Furlan-Magaril, T Nagano, S Schoenfelder, ...
F1000Research 4, 2015
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
S Schoenfelder, R Sugar, A Dimond, BM Javierre, H Armstrong, B Mifsud, ...
Nature genetics 47 (10), 1179-1186, 2015
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
J Cairns, P Freire-Pritchett, SW Wingett, C Várnai, A Dimond, V Plagnol, ...
Genome biology 17 (1), 1-17, 2016
Global reorganization of the nuclear landscape in senescent cells
T Chandra, PA Ewels, S Schoenfelder, M Furlan-Magaril, SW Wingett, ...
Cell reports 10 (4), 471-483, 2015
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
NH Dryden, LR Broome, F Dudbridge, N Johnson, N Orr, S Schoenfelder, ...
Genome research 24 (11), 1854-1868, 2014
Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
R Jäger, G Migliorini, M Henrion, R Kandaswamy, HE Speedy, A Heindl, ...
Nature communications 6 (1), 1-9, 2015
The transcriptional interactome: gene expression in 3D
S Schoenfelder, I Clay, P Fraser
Current opinion in genetics & development 20 (2), 127-133, 2010
Comparison of Hi-C results using in-solution versus in-nucleus ligation
T Nagano, C Várnai, S Schoenfelder, BM Javierre, SW Wingett, P Fraser
Genome biology 16 (1), 1-13, 2015
Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci
P Martin, A McGovern, G Orozco, K Duffus, A Yarwood, S Schoenfelder, ...
Nature communications 6 (1), 1-7, 2015
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
P Freire-Pritchett, S Schoenfelder, C Várnai, SW Wingett, J Cairns, ...
Elife 6, e21926, 2017
Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
L Harewood, K Kishore, MD Eldridge, S Wingett, D Pearson, ...
Genome biology 18 (1), 1-11, 2017
GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data
B Mifsud, I Martincorena, E Darbo, R Sugar, S Schoenfelder, P Fraser, ...
PloS one 12 (4), e0174744, 2017
Long-range enhancer interactions are prevalent in mouse embryonic stem cells and are reorganized upon pluripotent state transition
CL Novo, BM Javierre, J Cairns, A Segonds-Pichon, SW Wingett, ...
Cell reports 22 (10), 2615-2627, 2018
Capture Hi-C identifies a novel causal gene, IL20RA, in the pan-autoimmune genetic susceptibility region 6q23
A McGovern, S Schoenfelder, P Martin, J Massey, K Duffus, D Plant, ...
Genome biology 17 (1), 1-15, 2016
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