Takeyuki Tamura
Takeyuki Tamura
Associate Professor, Bioinformatics Center, Institute for Chemical Research, Kyoto University
Verified email at - Homepage
Cited by
Cited by
Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition
T Tamura, T Akutsu
BMC bioinformatics 8, 1-14, 2007
Finding a periodic attractor of a Boolean network
T Akutsu, S Kosub, AA Melkman, T Tamura
IEEE/ACM transactions on computational biology and bioinformatics 9 (5 …, 2012
Colony-live a high-throughput method for measuring microbial colony growth kinetics reveals diverse growth effects of gene knockouts in Escherichia coli
R Takeuchi, T Tamura, T Nakayashiki, Y Tanaka, A Muto, BL Wanner, ...
BMC microbiology 14, 1-11, 2014
Detecting a singleton attractor in a Boolean network utilizing SAT algorithms
T Tamura, T Akutsu
IEICE Transactions on Fundamentals of Electronics, Communications and …, 2009
Completing networks using observed data
T Akutsu, T Tamura, K Horimoto
International Conference on Algorithmic Learning Theory, 126-140, 2009
Determining a singleton attractor of an AND/OR Boolean network in O (1.587 n) time
AA Melkman, T Tamura, T Akutsu
Information Processing Letters 110 (14-15), 565-569, 2010
A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures
D Fukagawa, T Tamura, A Takasu, E Tomita, T Akutsu
BMC bioinformatics 12, 1-9, 2011
On control of singleton attractors in multiple Boolean networks: integer programming-based method
Y Qiu, T Tamura, WK Ching, T Akutsu
BMC systems biology 8, 1-10, 2014
Algorithms for inference, analysis and control of Boolean networks
T Akutsu, M Hayashida, T Tamura
Algebraic Biology: Third International Conference, AB 2008, Castle of …, 2008
Integer programming-based approach to attractor detection and control of boolean networks
T Akutsu, Y Zhao, M Hayashida, T Tamura
IEICE TRANSACTIONS on Information and Systems 95 (12), 2960-2970, 2012
Exact algorithms for computing the tree edit distance between unordered trees
T Akutsu, D Fukagawa, A Takasu, T Tamura
Theoretical Computer Science 412 (4-5), 352-364, 2011
Determining a singleton attractor of a Boolean network with nested canalyzing functions
T Akutsu, AA Melkman, T Tamura, M Yamamoto
Journal of computational biology 18 (10), 1275-1290, 2011
A clique-based method using dynamic programming for computing edit distance between unordered trees
T Mori, T Tamura, D Fukagawa, A Takasu, E Tomita, T Akutsu
Journal of computational biology 19 (10), 1089-1104, 2012
Compound analysis via graph kernels incorporating chirality
JB Brown, T Urata, T Tamura, MA Arai, T Kawabata, T Akutsu
Journal of Bioinformatics and Computational Biology 8 (supp01), 63-81, 2010
Finding minimum reaction cuts of metabolic networks under a boolean model using integer programming and feedback vertex sets
T Tamura, K Takemoto, T Akutsu
International Journal of Knowledge Discovery in Bioinformatics (IJKDB) 1 (1 …, 2010
Circulating exosomal miRNA profiles predict the occurrence and recurrence of hepatocellular carcinoma in patients with direct-acting antiviral-induced sustained viral response
S Itami-Matsumoto, M Hayakawa, S Uchida-Kobayashi, M Enomoto, ...
Biomedicines 7 (4), 87, 2019
Finding optimal control policy in probabilistic Boolean networks with hard constraints by using integer programming and dynamic programming
X Chen, T Akutsu, T Tamura, WK Ching
International Journal of Data Mining and Bioinformatics 7 (3), 1-22, 2013
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features
Y Bao, S Marini, T Tamura, M Kamada, S Maegawa, H Hosokawa, J Song, ...
Briefings in bioinformatics 20 (5), 1669-1684, 2019
Integer programming-based methods for attractor detection and control of Boolean networks
T Akutsu, M Hayashida, T Tamura
Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held …, 2009
Network Completion Using Dynamic Programming and Least‐Squares Fitting
N Nakajima, T Tamura, Y Yamanishi, K Horimoto, T Akutsu
The Scientific World Journal 2012 (1), 957620, 2012
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Articles 1–20