| DEEP: a general computational framework for predicting enhancers D Kleftogiannis, P Kalnis, VB Bajic Nucleic acids research 43 (1), e6-e6, 2015 | 145 | 2015 |
| DWFS: a wrapper feature selection tool based on a parallel genetic algorithm O Soufan, D Kleftogiannis, P Kalnis, VB Bajic PloS one 10 (2), e0117988, 2015 | 142 | 2015 |
| Progress and challenges in bioinformatics approaches for enhancer identification D Kleftogiannis, P Kalnis, VB Bajic Briefings in bioinformatics 17 (6), 967-979, 2016 | 109 | 2016 |
| Genome-wide plasma DNA methylation features of metastatic prostate cancer A Wu, P Cremaschi, D Wetterskog, V Conteduca, GM Franceschini, ... The Journal of clinical investigation 130 (4), 1991-2000, 2020 | 82 | 2020 |
| Tissue-specific cell-free DNA degradation quantifies circulating tumor DNA burden G Zhu, YA Guo, D Ho, P Poon, ZW Poh, PM Wong, A Gan, MM Chang, ... Nature communications 12 (1), 2229, 2021 | 66 | 2021 |
| DENdb: database of integrated human enhancers H Ashoor, D Kleftogiannis, A Radovanovic, VB Bajic Database 2015, bav085, 2015 | 59 | 2015 |
| Where we stand, where we are moving: Surveying computational techniques for identifying miRNA genes and uncovering their regulatory role D Kleftogiannis, A Korfiati, K Theofilatos, S Likothanassis, A Tsakalidis, ... Journal of biomedical informatics 46 (3), 563-573, 2013 | 59 | 2013 |
| Ultra-sensitive mutation detection and genome-wide DNA copy number reconstruction by error-corrected circulating tumor DNA sequencing S Mansukhani, LJ Barber, D Kleftogiannis, SY Moorcraft, M Davidson, ... Clinical chemistry 64 (11), 1626-1635, 2018 | 55 | 2018 |
| In Vivo Modeling of Chemoresistant Neuroblastoma Provides New Insights into Chemorefractory Disease and Metastasis O Yogev, GS Almeida, KT Barker, SL George, C Kwok, J Campbell, ... Cancer research 79 (20), 5382-5393, 2019 | 44 | 2019 |
| Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures D Kleftogiannis, P Kalnis, VB Bajic PloS one 8 (9), e75505, 2013 | 42 | 2013 |
| YamiPred: A novel evolutionary method for predicting pre-miRNAs and selecting relevant features D Kleftogiannis, K Theofilatos, S Likothanassis, S Mavroudi IEEE/ACM transactions on computational biology and bioinformatics 12 (5 …, 2015 | 39 | 2015 |
| EnsembleGASVR: a novel ensemble method for classifying missense single nucleotide polymorphisms T Rapakoulia, K Theofilatos, D Kleftogiannis, S Likothanasis, A Tsakalidis, ... Bioinformatics 30 (16), 2324-2333, 2014 | 31 | 2014 |
| Early response evaluation by single cell signaling profiling in acute myeloid leukemia BS Tislevoll, M Hellesøy, OHE Fagerholt, SE Gullaksen, A Srivastava, ... Nature communications 14 (1), 115, 2023 | 20 | 2023 |
| The Human Interactome Knowledge Base (HINT-KB): an integrative human protein interaction database enriched with predicted protein–protein interaction scores using a novel … K Theofilatos, C Dimitrakopoulos, S Likothanassis, D Kleftogiannis, ... Artificial Intelligence Review 42, 427-443, 2014 | 12* | 2014 |
| Development, application and evaluation of a 1-D full life cycle anchovy and sardine model for the North Aegean Sea (Eastern Mediterranean) A Gkanasos, S Somarakis, K Tsiaras, D Kleftogiannis, M Giannoulaki, ... PloS one 14 (8), e0219671, 2019 | 11 | 2019 |
| A common approach for consumer and provider fairness in recommendations D Sacharidis, K Mouratidis, D Kleftogiannis ACM 2431, 1, 2019 | 11 | 2019 |
| Predicting human miRNA target genes using a novel computational intelligent framework A Korfiati, K Theofilatos, D Kleftogiannis, C Alexakos, S Likothanassis, ... Information Sciences 294, 576-585, 2015 | 11 | 2015 |
| Identification of single nucleotide variants using position-specific error estimation in deep sequencing data D Kleftogiannis, M Punta, A Jayaram, S Sandhu, SQ Wong, ... BMC Medical Genomics 12, 1-12, 2019 | 9 | 2019 |
| Detection of genomic alterations in breast cancer with circulating tumour DNA sequencing D Kleftogiannis, D Ho, JX Liew, PSY Poon, A Gan, RCH Ng, BKT Tan, ... Scientific Reports 10 (1), 16774, 2020 | 8 | 2020 |
| ncRNAclass: A web platform for non-coding RNA feature calculation and microRNAs and targets prediction K Karathanou, K Theofilatos, D Kleftogiannis, C Alexakos, ... International Journal on Artificial Intelligence Tools 24 (01), 1540002, 2015 | 7* | 2015 |
Panos KalnisProfessor of Computer Science, King Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
