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Zhirui Hu
Zhirui Hu
Bioinformatics Fellow, Gladstone Institute
Verified email at gladstone.ucsf.edu
Title
Cited by
Cited by
Year
Convergent regulatory evolution and loss of flight in paleognathous birds
TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ...
Science 364 (6435), 74-78, 2019
2382019
A RIPK1-regulated inflammatory microglial state in amyotrophic lateral sclerosis
L Mifflin, Z Hu, C Dufort, CC Hession, AJ Walker, K Niu, H Zhu, N Liu, ...
Proceedings of the National Academy of Sciences 118 (13), e2025102118, 2021
502021
Bayesian detection of convergent rate changes of conserved noncoding elements on phylogenetic trees
Z Hu, TB Sackton, SV Edwards, JS Liu
Molecular biology and evolution 36 (5), 1086-1100, 2019
482019
Head, modifier, and constraint detection in short texts
Z Wang, H Wang, Z Hu
2014 IEEE 30th International Conference on Data Engineering, 280-291, 2014
352014
Pinning adaptive synchronization of complex dynamical network with multi-links
Q Hu, H Peng, Y Wang, Z Hu, Y Yang
Nonlinear Dynamics 69, 1813-1824, 2012
292012
Text Summarization Using FrameNet‐Based Semantic Graph Model
X Han, T Lv, Z Hu, X Wang, C Wang
Scientific Programming 2016 (1), 5130603, 2016
282016
Reduction of mNAT1/hNAT2 contributes to cerebral endothelial necroptosis and Aβ accumulation in Alzheimer’s disease
C Zou, L Mifflin, Z Hu, T Zhang, B Shan, H Wang, X Xing, H Zhu, ...
Cell reports 33 (10), 2020
272020
A novel epigenetic AML1‐ETO/THAP10/miR‐383 mini‐circuitry contributes to t(8;21) leukaemogenesis
Y Li, Q Ning, J Shi, Y Chen, M Jiang, L Gao, W Huang, Y Jing, S Huang, ...
EMBO Molecular Medicine 9 (7), 933-949, 2017
262017
Modeling stochastic variability in multiband time-series data
Z Hu, H Tak
The Astronomical Journal 160 (6), 265, 2020
252020
3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
MN Djekidel, Z Liang, Q Wang, Z Hu, G Li, Y Chen, MQ Zhang
Genome biology 16, 1-16, 2015
252015
Deep flanking sequence engineering for efficient promoter design using DeepSEED
P Zhang, H Wang, H Xu, L Wei, L Liu, Z Hu, X Wang
Nature Communications 14 (1), 6309, 2023
122023
SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation
Z Hu, S Zu, JS Liu
NAR genomics and bioinformatics 2 (4), lqaa077, 2020
102020
Measurement error models: From nonparametric methods to deep neural networks
Z Hu, ZT Ke, JS Liu
Statistical Science 37 (4), 473-493, 2022
82022
Novel Markov model of induced pluripotency predicts gene expression changes in reprogramming
Z Hu, M Qian, MQ Zhang
BMC systems biology 5, 1-12, 2011
72011
Small C-terminal domain phosphatase 3 Dephosphorylates the linker sites of receptor-regulated Smads (R-Smads) to ensure transforming growth factor β (TGFβ)-mediated germ layer …
G Sun, Z Hu, Z Min, X Yan, Z Guan, H Su, Y Fu, X Ma, YG Chen, ...
Journal of Biological Chemistry 290 (28), 17239-17249, 2015
62015
PhyloAcc-GT: A Bayesian method for inferring patterns of substitution rate shifts on targeted lineages accounting for gene tree discordance
H Yan, Z Hu, GWC Thomas, SV Edwards, TB Sackton, JS Liu
Molecular Biology and Evolution 40 (9), msad195, 2023
5*2023
Unsupervised head--modifier detection in search queries
Z Wang, F Wang, H Wang, Z Hu, J Yan, F Li, JR Wen, Z Li
ACM Transactions on Knowledge Discovery from Data (TKDD) 11 (2), 1-28, 2016
42016
Practical guidance and workflows for identifying fast evolving non-coding genomic elements using PhyloAcc
GWC Thomas, P Gemmell, SB Shakya, Z Hu, JS Liu, TB Sackton, ...
Integrative and Comparative Biology, icae056, 2024
2024
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