| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 18251 | 2012 |
| metaSPAdes: a new versatile metagenomic assembler S Nurk, D Meleshko, A Korobeynikov, PA Pevzner Genome research 27 (5), 824-834, 2017 | 2186 | 2017 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1761* | 2013 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 787 | 2022 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... Genome research 30 (9), 1291-1305, 2020 | 345 | 2020 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101-107, 2021 | 182 | 2021 |
| Research in computational molecular biology S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013 | 138 | 2013 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 108 | 2014 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 105 | 2022 |
| Model-driven discovery of underground metabolic functions in Escherichia coli GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ... Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015 | 90 | 2015 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 78 | 2022 |
| Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ... Genome research 23 (5), 867-877, 2013 | 77 | 2013 |
| Segmental duplications and their variation in a complete human genome MR Vollger, X Guitart, PC Dishuck, L Mercuri, WT Harvey, A Gershman, ... Science 376 (6588), eabj6965, 2022 | 67 | 2022 |
| STRONG: metagenomics strain resolution on assembly graphs C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ... Genome biology 22, 1-34, 2021 | 50* | 2021 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20 (1), 1-14, 2019 | 42 | 2019 |
| Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient X Fang, JM Monk, S Nurk, M Akseshina, Q Zhu, C Gemmell, ... Frontiers in microbiology 9, 2559, 2018 | 39 | 2018 |
| What is the difference between the breakpoint graph and the de Bruijn graph? Y Lin, S Nurk, PA Pevzner BMC genomics 15 (6), 1-11, 2014 | 27 | 2014 |
| Verkko: telomere-to-telomere assembly of diploid chromosomes M Rautiainen, S Nurk, BP Walenz, GA Logsdon, D Porubsky, A Rhie, ... BioRxiv, 2022.06. 24.497523, 2022 | 18 | 2022 |
| A multi-omics characterization of the natural product potential of tropical filamentous marine cyanobacteria T Leăo, M Wang, N Moss, R da Silva, J Sanders, S Nurk, A Gurevich, ... Marine drugs 19 (1), 20, 2021 | 16 | 2021 |
| SPAligner: alignment of long diverged molecular sequences to assembly graphs T Dvorkina, D Antipov, A Korobeynikov, S Nurk BMC bioinformatics 21 (12), 1-14, 2020 | 11 | 2020 |
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
