Sergey Nurk
Sergey Nurk
Senior Applications Bioinformatician, Oxford Nanopore Technologies
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
metaSPAdes: a new versatile metagenomic assembler
S Nurk, D Meleshko, A Korobeynikov, PA Pevzner
Genome research 27 (5), 824-834, 2017
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ...
Genome research 30 (9), 1291-1305, 2020
The structure, function and evolution of a complete human chromosome 8
GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ...
Nature 593 (7857), 101-107, 2021
Research in computational molecular biology
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
Model-driven discovery of underground metabolic functions in Escherichia coli
GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ...
Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ...
Genome research 23 (5), 867-877, 2013
Segmental duplications and their variation in a complete human genome
MR Vollger, X Guitart, PC Dishuck, L Mercuri, WT Harvey, A Gershman, ...
Science 376 (6588), eabj6965, 2022
STRONG: metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ...
Genome biology 22, 1-34, 2021
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ...
Genome biology 20 (1), 1-14, 2019
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient
X Fang, JM Monk, S Nurk, M Akseshina, Q Zhu, C Gemmell, ...
Frontiers in microbiology 9, 2559, 2018
What is the difference between the breakpoint graph and the de Bruijn graph?
Y Lin, S Nurk, PA Pevzner
BMC genomics 15 (6), 1-11, 2014
Verkko: telomere-to-telomere assembly of diploid chromosomes
M Rautiainen, S Nurk, BP Walenz, GA Logsdon, D Porubsky, A Rhie, ...
BioRxiv, 2022.06. 24.497523, 2022
A multi-omics characterization of the natural product potential of tropical filamentous marine cyanobacteria
T Leăo, M Wang, N Moss, R da Silva, J Sanders, S Nurk, A Gurevich, ...
Marine drugs 19 (1), 20, 2021
SPAligner: alignment of long diverged molecular sequences to assembly graphs
T Dvorkina, D Antipov, A Korobeynikov, S Nurk
BMC bioinformatics 21 (12), 1-14, 2020
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