| Big data in IBD: big progress for clinical practice NSS Tabib, M Madgwick, P Sudhakar, B Verstockt, T Korcsmaros, ... Gut 69 (8), 1520-1532, 2020 | 140 | 2020 |
| Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy P Pavlidis, A Tsakmaki, E Pantazi, K Li, D Cozzetto, J Digby-Bell, F Yang, ... Nature communications 13 (1), 5820, 2022 | 50 | 2022 |
| Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner … L Gul, D Modos, S Fonseca, M Madgwick, JP Thomas, P Sudhakar, ... Journal of Extracellular Vesicles 11 (1), e12189, 2022 | 50 | 2022 |
| Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth AM McKee, BM Kirkup, M Madgwick, WJ Fowler, CA Price, SA Dreger, ... Iscience 24 (9), 2021 | 38 | 2021 |
| SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks L Csabai, D Fazekas, T Kadlecsik, M Szalay-Bekő, B Bohár, M Madgwick, ... Nucleic acids research 50 (D1), D701-D709, 2022 | 23 | 2022 |
| ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways A Treveil, B Bohar, P Sudhakar, L Gul, L Csabai, M Olbei, M Poletti, ... PLOS Computational Biology 17 (2), e1008685, 2021 | 13 | 2021 |
| DOP70 An integrated multi-omics biomarker predicting endoscopic response in ustekinumab treated patients with Crohn's disease B Verstockt, P Sudahakar, B Creyns, S Verstockt, J Cremer, WJ Wollants, ... Journal of Crohn's and Colitis 13 (Supplement_1), S072-S073, 2019 | 13 | 2019 |
| A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis J Brooks-Warburton, D Modos, P Sudhakar, M Madgwick, JP Thomas, ... Nature Communications 13 (1), 2299, 2022 | 9 | 2022 |
| CytokineLink: a cytokine communication map to analyse immune responses—case studies in inflammatory bowel disease and COVID-19 M Olbei, JP Thomas, I Hautefort, A Treveil, B Bohar, M Madgwick, L Gul, ... Cells 10 (9), 2242, 2021 | 8 | 2021 |
| Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumour growth via a mast cell-dependent pathway BM Kirkup, AM McKee, M Madgwick, CA Price, SA Dreger, KA Makin, ... bioRxiv, 2020.03. 07.982108, 2020 | 5 | 2020 |
| Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways M Poletti, A Treveil, L Csabai, L Gul, D Modos, M Madgwick, M Olbei, ... NPJ Systems Biology and Applications 8 (1), 15, 2022 | 4 | 2022 |
| A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in a complex disease J Brooks, D Modos, P Sudhakar, D Fazekas, A Zoufir, O Kapuy, ... BioRxiv, 692269, 2019 | 3 | 2019 |
| Immune checkpoint inhibitor-induced colitis is mediated by CXCR6+ polyfunctional lymphocytes and is dependent on the IL23/IFNγ axis J Lo, D Cozzetto, Z Liu, H Ibraheim, J Sieh, M Olbei, J Alexander, ... | 2 | 2022 |
| Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists B Bohar, D Fazekas, M Madgwick, L Csabai, M Olbei, T Korcsmáros, ... F1000Research 10, 2021 | 2 | 2021 |
| AutophagyNet: High-resolution data source for the analysis of autophagy and its regulation L Csabai, B Bohár, D Türei, S Prabhu, L Földvári-Nagy, M Madgwick, ... Autophagy 20 (1), 188-201, 2024 | 1 | 2024 |
| Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level M Olbei, B Bohar, D Fazekas, M Madgwick, P Sudhakar, I Hautefort, ... Msystems 7 (4), e01493-21, 2022 | 1 | 2022 |
| CytokineLink: a cytokine communication map to analyse immune responses in inflammatory and infectious diseases M Olbei, JP Thomas, I Hautefort, A Treveil, B Bohar, M Madgwick, L Gul, ... bioRxiv, 2021.08. 10.455874, 2021 | 1 | 2021 |
| P070 Machine learning approaches to identify IBD biomarkers from longitudinal microbiome data M Madgwick, P Sudhakar, NS Tabib, P Norvaisas, P Creed, B Verstockt, ... Journal of Crohn's and Colitis 14 (Supplement_1), S170-S171, 2020 | 1 | 2020 |
| P027 Machine learning approaches to identify prognosis indicators from microbiome data M Madgwick, P Sudhakar, T Korcsmáros Journal of Crohn's and Colitis 13 (Supplement_1), S99-S100, 2019 | 1 | 2019 |
| AutoXAI4Omics: an Automated Explainable AI tool for Omics and tabular data J Strudwick, LJ Gardiner, K Denning-James, N Haiminen, A Evans, J Kelly, ... bioRxiv, 2024.03. 25.586460, 2024 | | 2024 |
