Genome-wide maps of chromatin state in pluripotent and lineage-committed cells TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ... Nature 448 (7153), 553-560, 2007 | 4954 | 2007 |
Quantitative analysis of culture using millions of digitized books JB Michel, YK Shen, AP Aiden, A Veres, MK Gray, JP Pickett, D Hoiberg, ... science 331 (6014), 176, 2011 | 4022* | 2011 |
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression AM Khalil, M Guttman, M Huarte, M Garber, A Raj, D Rivea Morales, ... Proceedings of the National Academy of Sciences 106 (28), 11667-11672, 2009 | 3356 | 2009 |
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ... Science 356 (6333), 92-95, 2017 | 1877 | 2017 |
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ... PLoS genetics 4 (10), e1000242, 2008 | 1170 | 2008 |
Improved reference genome of Aedes aegypti informs arbovirus vector control BJ Matthews, O Dudchenko, SB Kingan, S Koren, I Antoshechkin, ... Nature 563 (7732), 501-507, 2018 | 505 | 2018 |
Drug interactions and the evolution of antibiotic resistance PJ Yeh, MJ Hegreness, AP Aiden, R Kishony Nature Reviews Microbiology 7 (6), 460-466, 2009 | 436 | 2009 |
Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140-1150, 2018 | 183 | 2018 |
The fundamental role of chromatin loop extrusion in physiological V (D) J recombination Y Zhang, X Zhang, Z Ba, Z Liang, EW Dring, H Hu, J Lou, N Kyritsis, ... Nature 573 (7775), 600-604, 2019 | 147 | 2019 |
Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network AP Aiden, MN Rivera, E Rheinbay, M Ku, EJ Coffman, TT Truong, ... Cell stem cell 6 (6), 591-602, 2010 | 100 | 2010 |
Large DNA methylation nadirs anchor chromatin loops maintaining hematopoietic stem cell identity X Zhang, M Jeong, X Huang, XQ Wang, X Wang, W Zhou, MS Shamim, ... Molecular cell 78 (3), 506-521. e6, 2020 | 97* | 2020 |
Multiomic profiling identifies cis-regulatory networks underlying human pancreatic β cell identity and function N Lawlor, EJ Marquez, P Orchard, N Narisu, MS Shamim, A Thibodeau, ... Cell reports 26 (3), 788-801. e6, 2019 | 75 | 2019 |
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication A Presser, MB Elowitz, M Kellis, R Kishony Proceedings of the National Academy of Sciences 105 (3), 950-954, 2008 | 71 | 2008 |
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature communications 14 (1), 3303, 2023 | 63 | 2023 |
Line shapes of atomic-candle-type Rabi resonances JG Coffer, B Sickmiller, A Presser, JC Camparo Physical Review A 66 (2), 023806, 2002 | 48 | 2002 |
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ... Plos one 18 (11), e0294283, 2023 | 36 | 2023 |
MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface M Houlard, EE Cutts, MS Shamim, J Godwin, D Weisz, AP Aiden, ... Elife 10, e73348, 2021 | 32 | 2021 |
Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not H Gu, H Harris, M Olshansky, Y Eliaz, A Krishna, A Kalluchi, M Jacobs, ... BioRxiv, 2021.10. 03.462599, 2021 | 29 | 2021 |
Examination of a crystal oscillator's frequency fluctuations during the enhanced space-radiation environment of a solar flare A Presser, J Camparo IEEE Transactions on Nuclear Science 49 (5), 2605-2609, 2002 | 14 | 2002 |
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length 249 scaffolds AP Aiden Science 356, 92-95, 2017 | 2 | 2017 |