Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybrids DK Ko, D Rohozinski, Q Song, SH Taylor, TE Juenger, FG Harmon, ... PLoS genetics 12 (7), e1006197, 2016 | 117 | 2016 |
Functional diversification of ER stress responses in Arabidopsis N Pastor-Cantizano, DK Ko, E Angelos, Y Pu, F Brandizzi Trends in biochemical sciences 45 (2), 123-136, 2020 | 88 | 2020 |
Genome-wide dosage-dependent and-independent regulation contributes to gene expression and evolutionary novelty in plant polyploids X Shi, C Zhang, DK Ko, ZJ Chen Molecular Biology and Evolution 32 (9), 2351-2366, 2015 | 61 | 2015 |
Vision, challenges and opportunities for a Plant Cell Atlas SG Jha, AT Borowsky, BJ Cole, N Fahlgren, A Farmer, SC Huang, P Karia, ... Elife 10, e66877, 2021 | 50 | 2021 |
Network‐based approaches for understanding gene regulation and function in plants DK Ko, F Brandizzi The Plant Journal 104 (2), 302-317, 2020 | 46 | 2020 |
Evaluation of Methods to Assess in vivo Activity of Engineered Genome-Editing Nucleases in Protoplasts SS Nadakuduti, CG Starker, DK Ko, TB Jayakody, CR Buell, DF Voytas, ... Frontiers in plant science 10, 110, 2019 | 39 | 2019 |
Bioenergy Underground: Challenges and opportunities for phenotyping roots and the microbiome for sustainable bioenergy crop production LM York, JR Cumming, A Trusiak, G Bonito, AC von Haden, UC Kalluri, ... The Plant Phenome Journal 5 (1), e20028, 2022 | 15 | 2022 |
Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana DK Ko, F Brandizzi Communications Biology 5 (1), 16, 2022 | 14 | 2022 |
Relevance of the Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis E Angelos, DK Ko, S Zemelis-Durfee, F Brandizzi Astrobiology 21 (3), 367-380, 2021 | 14 | 2021 |
Transcriptome profiling of transgenic potato plants provides insights into variability caused by plant transformation DK Ko, SS Nadakuduti, DS Douches, CR Buell PLoS one 13 (11), e0206055, 2018 | 13 | 2018 |
Transcriptional competition shapes proteotoxic ER stress resolution DK Ko, F Brandizzi Nature plants 8 (5), 481-490, 2022 | 12 | 2022 |
Submergence-inducible and circadian rhythmic basic helix–loop–helix protein gene in Nicotiana tabacum DK Ko, MO Lee, JS Hahn, B Kim, CB Hong Journal of plant physiology 166 (10), 1090-1100, 2009 | 10 | 2009 |
An IRE1-proteasome system signalling cohort controls cell fate determination in unresolved proteotoxic stress of the plant endoplasmic reticulum DK Ko, JY Kim, EA Thibault, F Brandizzi Nature plants 9 (8), 1333-1346, 2023 | 9 | 2023 |
A temporal hierarchy underpins the transcription factor‐DNA interactome of the maize UPR DK Ko, F Brandizzi The Plant Journal 105 (1), 254-270, 2021 | 8 | 2021 |
Coexpression network construction and visualization from transcriptomes underlying ER stress responses DK Ko, F Brandizzi Plant Proteostasis: Methods and Protocols, 385-401, 2022 | 5 | 2022 |
Defense against phytopathogens relies on efficient antimicrobial protein secretion mediated by the microtubule-binding protein TGNap1 DD Bhandari, DK Ko, SJ Kim, K Nomura, SY He, F Brandizzi Nature Communications 14 (1), 6357, 2023 | 3 | 2023 |
First plant cell atlas workshop report S Rice, E Fryer, S Ghosh Jha, A Malkovskiy, H Meyer, J Thomas, ... Plant Direct 4 (10), e00271, 2020 | 3 | 2020 |
Transcriptome analysis revealed that Arabidopsis model plant invokes the activation of heat shock proteins and ER stress response against cesium stress D Choi, DK Ko, DH Kim Plant Biotechnology Reports 18 (3), 385-399, 2024 | | 2024 |
Dynamics of ER stress-induced gene regulation in plants DK Ko, F Brandizzi Nature Reviews Genetics, 1-13, 2024 | | 2024 |
Multi-omics Resources for Understanding Gene Regulation in Response to ER Stress in Plants DK Ko, F Brandizzi The Plant Endoplasmic Reticulum: Methods and Protocols, 261-272, 2024 | | 2024 |