Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae J Schacherer, JA Shapiro, DM Ruderfer, L Kruglyak Nature 458 (7236), 342-345, 2009 | 509 | 2009 |
Dissection of genetically complex traits with extremely large pools of yeast segregants IM Ehrenreich, N Torabi, Y Jia, J Kent, S Martis, JA Shapiro, D Gresham, ... Nature 464 (7291), 1039-1042, 2010 | 480 | 2010 |
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity EC Andersen, JP Gerke, JA Shapiro, JR Crissman, R Ghosh, JS Bloom, ... Nature genetics 44 (3), 285-290, 2012 | 433 | 2012 |
Adaptive genic evolution in the Drosophila genomes JA Shapiro, W Huang, C Zhang, MJ Hubisz, J Lu, DA Turissini, S Fang, ... Proceedings of the National Academy of Sciences 104 (7), 2271-2276, 2007 | 252 | 2007 |
Natural variation in a chloride channel subunit confers avermectin resistance in C. elegans R Ghosh, EC Andersen, JA Shapiro, JP Gerke, L Kruglyak Science 335 (6068), 574-578, 2012 | 196 | 2012 |
Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility X Lu, JA Shapiro, CT Ting, Y Li, C Li, J Xu, H Huang, YJ Cheng, ... Genome research 20 (8), 1097-1102, 2010 | 56 | 2010 |
Detecting novel low-abundant transcripts in Drosophila S Lee, J Bao, G Zhou, J Shapiro, J Xu, RZ Shi, X Lu, T Clark, D Johnson, ... Rna 11 (6), 939-946, 2005 | 45 | 2005 |
Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... Cell reports 34 (13), 2021 | 34 | 2021 |
RNA-Seq Analysis Reveals a Six-Gene SoxR Regulon in Streptomyces coelicolor N Naseer, JA Shapiro, M Chander PLOS One, 2014 | 29 | 2014 |
Spermatid-specific promoter of the SP-10 gene functions as an insulator in somatic cells PP Reddi, AN Shore, JA Shapiro, A Anderson, MH Stoler, KK Acharya Developmental biology 262 (1), 173-182, 2003 | 29 | 2003 |
Decoupled differentiation of gene expression and coding sequence among Drosophila populations MH Kohn, J Shapiro, CI Wu Genes & genetic systems 83 (3), 265-273, 2008 | 26 | 2008 |
Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations X Guo, R Zhang, Y Li, Z Wang, OP Ishchuk, KM Ahmad, J Wee, J Piskur, ... Methods 176, 82-90, 2020 | 16 | 2020 |
OpenPBTA: The Open Pediatric Brain Tumor Atlas JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ... Cell genomics 3 (7), 2023 | 12* | 2023 |
OpenPBTA: an open pediatric brain tumor atlas JA Shapiro, KS Gaonkar, CL Savonen, SJ Spielman, CJ Bethell, R Jin, ... bioRxiv, 2022.09. 13.507832, 2022 | 6 | 2022 |
Draft Genome Sequence of Exiguobacterium sp. Strain BMC-KP, an Environmental Isolate from Bryn Mawr, Pennsylvania P Hyson, JA Shapiro, MW Wien Genome Announcements 3 (5), 10.1128/genomea. 01164-15, 2015 | 4 | 2015 |
Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors MK Lee, N Azizgolshani, JA Shapiro, LN Nguyen, FW Kolling, GJ Zanazzi, ... Nature Communications 15 (1), 3634, 2024 | 1 | 2024 |
OMIC-14. OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS J Shapiro, C Savonen, C Bethell, K Gaonkar, Y Zhu, M Brown, N Duong, ... Neuro-Oncology 23 (Supplement_1), i40-i40, 2021 | 1 | 2021 |
The Single-cell Pediatric Cancer Atlas: Open-source data and tools for single-cell transcriptomics of pediatric tumors AG Hawkins, JA Shapiro, SJ Spielman, DS Mejia, DV Prasad, N Ichihara, ... Cancer Research 84 (6_Supplement), 2859-2859, 2024 | | 2024 |
The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors AG Hawkins, JA Shapiro, SJ Spielman, DS Mejia, D Venkatesh Prasad, ... bioRxiv, 2024.04. 19.590243, 2024 | | 2024 |
Erratum: Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality (Cell Reports (2021) 34 (13),(S221112472100231X),(10.1016 … MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... Cell Reports 42 (6), 112600, 2023 | | 2023 |