Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families JL Geoghegan, S Duchêne, EC Holmes PLoS pathogens 13 (2), e1006215, 2017 | 143 | 2017 |
Population-epigenetic models of selection JL Geoghegan, HG Spencer Theoretical population biology 81 (3), 232-242, 2012 | 87 | 2012 |
Predicting virus emergence amid evolutionary noise JL Geoghegan, EC Holmes Open biology 7 (10), 170189, 2017 | 86 | 2017 |
Virological factors that increase the transmissibility of emerging human viruses JL Geoghegan, M Senior, Alistair, F Di Giallonardo, EC Holmes Proceedings of the National Academy of Science in the USA, 2016 | 77 | 2016 |
Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam JL Geoghegan, D Kühnert, RA Halpin, X Lin, A Simenauer, A Akopov, ... Journal of virology 89 (17), 8871-8879, 2015 | 53 | 2015 |
The phylogenomics of evolving virus virulence JL Geoghegan, EC Holmes Nature Reviews Genetics 19 (12), 756-769, 2018 | 52 | 2018 |
Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus BD Dalziel, K Huang, JL Geoghegan, N Arinaminpathy, EJ Dubovi, ... PLOS Pathogens 10 (10), e1004455, 2014 | 47 | 2014 |
Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence JL Geoghegan, AM Senior, EC Holmes Proceedings of the Royal Society B: Biological Sciences 283 (1837), 20160727, 2016 | 43 | 2016 |
Transgenerational epigenetics Elsevier, 2014 | 36* | 2014 |
Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ... Journal of virology 90 (2), 862-872, 2016 | 34 | 2016 |
Seasonal Drivers of the Epidemiology of Arthropod-Borne Viruses in Australia JL Geoghegan, PJ Walker, JB Duchemin, I Jeanne, EC Holmes PLOS Neglected Tropical Diseases 8 (11), e3325, 2014 | 34 | 2014 |
Exploring epiallele stability in a population-epigenetic model JL Geoghegan, HG Spencer Theoretical Population Biology 83, 136–144, 2012 | 32 | 2012 |
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71 NTK Tuyen, TT Thanh, TT Ngan, HMT Van, S Sabanathan, TTM Van, ... Journal of virological methods 215, 30-36, 2015 | 29 | 2015 |
Evolutionary virology at 40 JL Geoghegan, EC Holmes Genetics 210 (4), 1151-1162, 2018 | 27 | 2018 |
Continental synchronicity of human influenza virus epidemics despite climactic variation JL Geoghegan, AF Saavedra, S Duchêne, S Sullivan, I Barr, EC Holmes PLoS pathogens 14 (1), e1006780, 2018 | 27 | 2018 |
Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods S Duchêne, JL Geoghegan, EC Holmes, SYW Ho Bioinformatics, 2016 | 26 | 2016 |
Virological sampling of inaccessible wildlife with drones JL Geoghegan, V Pirotta, E Harvey, A Smith, JP Buchmann, M Ostrowski, ... Viruses 10 (6), 300, 2018 | 25 | 2018 |
Recommendations for ecotoxicity testing with stygobiotic species in the framework of groundwater environmental risk assessment T Di Lorenzo, WD Di Marzio, B Fiasca, DMP Galassi, K Korbel, S Iepure, ... Science of the Total Environment 681, 292-304, 2019 | 23* | 2019 |
The adaptive invasion of epialleles in a heterogeneous environment JL Geoghegan, HG Spencer Theoretical Population Biology 88, 1-8, 2013 | 23 | 2013 |
The evolutionary potential of paramutation: A population-epigenetic model JL Geoghegan, HG Spencer Theoretical Population Biology 88, 9-19, 2013 | 22 | 2013 |