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Rasmus Agren
Rasmus Agren
Verified email at chalmers.se
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A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
10602013
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease
A Mardinoglu, R Agren, C Kampf, A Asplund, M Uhlen, J Nielsen
Nature communications 5 (1), 1-11, 2014
4452014
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
R Agren, S Bordel, A Mardinoglu, N Pornputtapong, I Nookaew, J Nielsen
PLoS computational biology 8 (5), e1002518, 2012
4092012
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
R Agren, L Liu, S Shoaie, W Vongsangnak, I Nookaew, J Nielsen
PLOS Computational Biology 9 (3), e1002980, 2013
3992013
Identification of anticancer drugs for hepatocellular carcinoma through personalized genome‐scale metabolic modeling
R Agren, A Mardinoglu, A Asplund, C Kampf, M Uhlen, J Nielsen
Molecular systems biology 10 (3), 721, 2014
2912014
Integration of clinical data with a genome-scale metabolic model of the human adipocyte
A Mardinoglu, R Agren, C Kampf, A Asplund, I Nookaew, P Jacobson, ...
Molecular Systems Biology 9 (1), 2013
2272013
Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes
S Bordel, R Agren, J Nielsen
PLoS computational biology 6 (7), e1000859, 2010
1792010
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
H Wang, S Marcišauskas, BJ Sánchez, I Domenzain, D Hermansson, ...
PLoS computational biology 14 (10), e1006541, 2018
1782018
Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials
L Caspeta, S Shoaie, R Agren, I Nookaew, J Nielsen
BMC systems biology 6 (1), 1-14, 2012
1292012
BioMet Toolbox: genome-wide analysis of metabolism
M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ...
Nucleic acids research 38 (suppl_2), W144-W149, 2010
1292010
Use of genome-scale metabolic models for understanding microbial physiology
L Liu, R Agren, S Bordel, J Nielsen
FEBS letters 584 (12), 2556-2564, 2010
1022010
Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production
R Agren, JM Otero, J Nielsen
Journal of Industrial Microbiology and Biotechnology 40 (7), 735-747, 2013
862013
Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis
S Tymoshenko, RD Oppenheim, R Agren, J Nielsen, D Soldati-Favre, ...
PLoS computational biology 11 (5), e1004261, 2015
852015
MEMOSys: Bioinformatics platform for genome-scale metabolic models
S Pabinger, R Rader, R Agren, J Nielsen, Z Trajanoski
BMC systems biology 5 (1), 1-9, 2011
442011
ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes
M Bysani, R Agren, C Davegårdh, P Volkov, T Rönn, P Unneberg, ...
Scientific reports 9 (1), 1-12, 2019
392019
Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA
E Ahmed, L Parducci, P Unneberg, R Ågren, F Schenk, JE Rattray, L Han, ...
Quaternary Science Reviews 181, 19-29, 2018
392018
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
322018
Metabolome dynamics of diapause in the butterfly Pieris napi: distinguishing maintenance, termination and post-diapause phases
P Lehmann, P Pruisscher, V Koštál, M Moos, P Šimek, S Nylin, R Agren, ...
Journal of Experimental Biology 221 (2), jeb169508, 2018
262018
Author Correction: ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes
M Bysani, R Agren, C Davegårdh, P Volkov, T Rönn, P Unneberg, ...
Scientific reports 10 (1), 1-1, 2020
22020
ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes (vol 9, pg 7785, 2019)
M Bysani, R Agren, C Davegardh, P Volkov, T Roenn, P Unneberg, ...
SCIENTIFIC REPORTS 10 (1), 2020
2020
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Articles 1–20