David M Speed
David M Speed
在 optusnet.com.au 的电子邮件经过验证
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
RA Irizarry, B Hobbs, F Collin, YD BeazerBarclay, KJ Antonellis, U Scherf, ...
Biostatistics 4 (2), 249-264, 2003
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad, RA Irizarry, M Åstrand, TP Speed
Bioinformatics 19 (2), 185-193, 2003
Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1
RGW Verhaak, KA Hoadley, E Purdom, V Wang, Y Qi, MD Wilkerson, ...
Cancer cell 17 (1), 98-110, 2010
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Cancer Genome Atlas (TCGA) Research Network
Nature 455 (7216), 1061, 2008
Summaries of Affymetrix GeneChip probe level data
RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
Nucleic acids research 31 (4), e15-e15, 2003
Integrated genomic analyses of ovarian carcinoma
Cancer Genome Atlas Research Network
Nature 474 (7353), 609, 2011
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
Nucleic acids research 30 (4), e15-e15, 2002
Comparison of discrimination methods for the classification of tumors using gene expression data
S Dudoit, J Fridlyand, TP Speed
Journal of the American statistical association 97 (457), 77-87, 2002
Bioinformatics and computational biology solutions using R and Bioconductor
R Gentleman, VJ Carey, W Huber, RA Irizarry, S Dudoit
Springer, 2005
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
S Dudoit, YH Yang, MJ Callow, TP Speed
Statistica sinica, 111-139, 2002
On the application of probability theory to agricultural experiments. Essay on principles. Section 9.
J Splawa-Neyman, DM Dabrowska, TP Speed
Statistical Science, 465-472, 1990
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
T Beissbarth, TP Speed
Bioinformatics 20 (9), 1464-1465, 2004
Normalization of RNA-seq data using factor analysis of control genes or samples
D Risso, J Ngai, TP Speed, S Dudoit
Nature biotechnology 32 (9), 896-902, 2014
Summarizing and correcting the GC content bias in high-throughput sequencing
Y Benjamini, TP Speed
Nucleic acids research 40 (10), e72-e72, 2012
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
Comparison of methods for image analysis on cDNA microarray data
YH Yang, MJ Buckley, S Dudoit, TP Speed
Journal of computational and graphical statistics 11 (1), 108-136, 2002
Resampling-based multiple testing for microarray data analysis
Y Ge, S Dudoit, TP Speed
Test 12 (1), 1-77, 2003
Normalization for cDNA microarry data
YH Yang, S Dudoit, P Luu, TP Speed
Microarrays: optical technologies and informatics 4266, 141-152, 2001
Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
X Li, S MacArthur, R Bourgon, D Nix, DA Pollard, VN Iyer, A Hechmer, ...
PLoS biology 6 (2), e27, 2008
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
M Delorenzi, T Speed
Bioinformatics 18 (4), 617-625, 2002
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