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Alicia Clum
Alicia Clum
Unknown affiliation
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
CS Chin, DH Alexander, P Marks, AA Klammer, J Drake, C Heiner, ...
Nature methods 10 (6), 563-569, 2013
42612013
Phased diploid genome assembly with single-molecule real-time sequencing
CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ...
Nature methods 13 (12), 1050-1054, 2016
16892016
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
14752017
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, ...
Nature genetics 47 (4), 410-415, 2015
9832015
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
RP De Vries, R Riley, A Wiebenga, G Aguilar-Osorio, S Amillis, ...
Genome biology 18, 1-45, 2017
4482017
Comparative genomics of biotechnologically important yeasts
R Riley, S Haridas, KH Wolfe, MR Lopes, CT Hittinger, M Göker, ...
Proceedings of the National Academy of Sciences 113 (35), 9882-9887, 2016
3222016
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
3022017
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
2962020
One bacterial cell, one complete genome
T Woyke, D Tighe, K Mavromatis, A Clum, A Copeland, W Schackwitz, ...
PloS one 5 (4), e10314, 2010
2582010
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
DJ Wohlbach, A Kuo, TK Sato, KM Potts, AA Salamov, KM LaButti, H Sun, ...
Proceedings of the National Academy of Sciences 108 (32), 13212-13217, 2011
2112011
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
E Martino, E Morin, GA Grelet, A Kuo, A Kohler, S Daghino, KW Barry, ...
New Phytologist 217 (3), 1213-1229, 2018
1942018
Phylogenomic analyses indicate that early fungi evolved digesting cell walls of algal ancestors of land plants
Y Chang, S Wang, S Sekimoto, AL Aerts, C Choi, A Clum, KM LaButti, ...
Genome Biology and Evolution 7 (6), 1590-1601, 2015
1782015
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
TC Vesth, JL Nybo, S Theobald, JC Frisvad, TO Larsen, KF Nielsen, ...
Nature Genetics 50 (12), 1688-1695, 2018
1772018
A mouse model for human norovirus
S Taube, AO Kolawole, M Höhne, JE Wilkinson, SA Handley, JW Perry, ...
MBio 4 (4), 10.1128/mbio. 00450-13, 2013
1752013
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation
K Mavromatis, ML Land, TS Brettin, DJ Quest, A Copeland, A Clum, ...
PloS one 7 (12), e48837, 2012
1712012
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum
M Peter, A Kohler, RA Ohm, A Kuo, J Krützmann, E Morin, M Arend, ...
Nature communications 7 (1), 12662, 2016
1522016
A comparative genomics study of 23 Aspergillus species from section Flavi
I Kjærbølling, T Vesth, JC Frisvad, JL Nybo, S Theobald, S Kildgaard, ...
Nature communications 11 (1), 1106, 2020
1362020
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production
JB McKinlay, M Laivenieks, BD Schindler, AA McKinlay, S Siddaramappa, ...
BMC genomics 11, 1-16, 2010
1312010
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
I Kjærbølling, TC Vesth, JC Frisvad, JL Nybo, S Theobald, A Kuo, ...
Proceedings of the National Academy of Sciences 115 (4), E753-E761, 2018
1282018
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature Microbiology 3 (12), 1417-1428, 2018
1112018
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