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Shraddha Pai
Shraddha Pai
Principal Investigator, Ontario Institute for Cancer Research
Verified email at utoronto.ca
Title
Cited by
Cited by
Year
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary
T Khare, S Pai, K Koncevicius, M Pal, E Kriukiene, Z Liutkeviciute, M Irimia, ...
Nature structural & molecular biology 19 (10), 1037-1043, 2012
2582012
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
N Chen, TW Harris, I Antoshechkin, C Bastiani, T Bieri, D Blasiar, ...
Nucleic acids research 33 (suppl_1), D383-D389, 2005
2342005
Epigenetics of major psychosis: progress, problems and perspectives
V Labrie, S Pai, A Petronis
Trends in genetics 28 (9), 427-435, 2012
1292012
Patient similarity networks for precision medicine
S Pai, GD Bader
Journal of molecular biology 430 (18), 2924-2938, 2018
852018
Identification of a nematode chemosensory gene family
N Chen, S Pai, Z Zhao, A Mah, R Newbury, RC Johnsen, Z Altun, ...
Proceedings of the National Academy of Sciences 102 (1), 146-151, 2005
752005
RCy3: Network biology using Cytoscape from within R
JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico
F1000Research 8 (1774), 1774, 2019
712019
DNA unmethylome profiling by covalent capture of CpG sites
E Kriukienė, V Labrie, T Khare, G Urbanavičiūtė, A Lapinaitė, ...
Nature communications 4 (1), 1-10, 2013
592013
Differential methylation of enhancer at IGF2 is associated with abnormal dopamine synthesis in major psychosis
S Pai, P Li, B Killinger, L Marshall, P Jia, J Liao, A Petronis, PE Szabó, ...
Nature communications 10 (1), 1-12, 2019
452019
netDx: interpretable patient classification using integrated patient similarity networks
S Pai, S Hui, R Isserlin, MA Shah, H Kaka, GD Bader
Molecular systems biology 15 (3), e8497, 2019
432019
Gviz: Plotting data and annotation information along genomic coordinates
F Hahne, S Durinck, R Ivanek, A Mueller, S Lianoglou, G Tan, L Parsons, ...
R package version 1 (4), 2013
342013
Minimal impairment in a rat model of duration discrimination following excitotoxic lesions of primary auditory and prefrontal cortices
S Pai, JC Erlich, C Kopec, CD Brody
Frontiers in systems neuroscience 5, 74, 2011
182011
Semi-automated atlas-based analysis of brain histological sections
CD Kopec, AC Bowers, S Pai, CD Brody
Journal of neuroscience methods 196 (1), 12-19, 2011
162011
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks
S Pai, P Weber, R Isserlin, H Kaka, S Hui, MA Shah, L Giudice, R Giugno, ...
F1000Research 9, 1239, 2021
22021
Plotting data and annotation information along genomic coordinates
F Hahne, S Durinck, R Ivanek, A Mueller, S Lianoglou, G Tan, L Parsons, ...
22016
Predicting prognosis in PFA ependymoma and group 3/4 medulloblastoma methylomes using interpretable epigenetic models
I Ng, A Fricke, S Pai
Cancer Research 82 (12_Supplement), 2505-2505, 2022
2022
Network Approaches for Precision Oncology
S Pai
Computational Methods for Precision Oncology, 199-213, 2022
2022
COVID-19 clusters in schools: frequency, size, and transmission rates from crowdsourced exposure reports
PF Tupper, S Pai, C Colijn
medRxiv, 2021
2021
Multi-scale systems genomics analysis predicts pathways, cell types and drug targets involved in normative human cognition variation
S Pai, S Hui, P Weber, S Narayan, O Whitley, P Li, V Labrie, J Baumbach, ...
bioRxiv, 751933, 2021
2021
SNPnotes: high-throughput tissue-specific functional annotation of single nucleotide variants
S Pai, MJ Apostolides, A Jung, MA Moss
F1000Research 8 (1784), 1784, 2019
2019
Neuroanatomical Localization of Timing-Specific Brain Loci in the Rat
SS Pai
Cold Spring Harbor Laboratory, 2010
2010
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Articles 1–20