Xuefeng Cui
Xuefeng Cui
Professor at Shandong University
Verified email at email.sdu.edu.cn
Cited by
Cited by
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
H Kuwahara, M Alazmi, X Cui, X Gao
Nucleic acids research 44 (W1), W217-W225, 2016
CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction
X Cui, Z Lu, S Wang, J Jing-Yan Wang, X Gao
Bioinformatics 32 (12), i332-i340, 2016
Homology search for genes
X Cui, T Vinař, B Brejová, D Shasha, M Li
Bioinformatics 23 (13), i97-i103, 2007
A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus
L Zhu, H Jiang, FK Sheong, X Cui, X Gao, Y Wang, X Huang
The Journal of Physical Chemistry B 120 (10), 2709-2720, 2016
Finding optimal interaction interface alignments between biological complexes
X Cui, H Naveed, X Gao
Bioinformatics 31 (12), i133-i141, 2015
Fingerprinting protein structures effectively and efficiently
X Cui, SC Li, L He, M Li
Bioinformatics 30 (7), 949-955, 2014
Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes
L Zhu, H Jiang, FK Sheong, X Cui, Y Wang, X Gao, X Huang
Progress in biophysics and molecular biology 128, 39-46, 2017
SHREC 2020: Classification in cryo-electron tomograms
I Gubins, ML Chaillet, G van der Schot, RC Veltkamp, F Förster, Y Hao, ...
Computers & Graphics 91, 279-289, 2020
SBOLme: a repository of SBOL parts for metabolic engineering
H Kuwahara, X Cui, R Umarov, R Grunberg, CJ Myers, X Gao
ACS synthetic biology 6 (4), 732-736, 2017
K-nearest uphill clustering in the protein structure space
X Cui, X Gao
Neurocomputing 220, 52-59, 2017
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
X Cui, SC Li, D Bu, B Alipanahi, M Li
Algorithms for Molecular Biology 8 (1), 1-13, 2013
Towards reliable automatic protein structure alignment
X Cui, SC Li, D Bu, M Li
Proceedings of the 13th International Workshop on Algorithms in …, 2013
Compare local pocket and global protein structure models by small structure patterns
X Cui, H Kuwahara, SC Li, X Gao
Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015
Correlation-Centric Network (CCN) representation for microbial co-occurrence patterns: new insights for microbial ecology
P Yang, C Tan, M Han, L Cheng, X Cui, K Ning
NAR genomics and bioinformatics 2 (2), lqaa042, 2020
Ontology-Aware Deep Learning Enables Ultrafast, Accurate and Interpretable Source Tracking among Sub-Million Microbial Community Samples from Hundreds of Niches
Y Zha, H Chong, H Qiu, K Kang, Y Dun, Z Chen, X Cui, K Ning
bioRxiv, 2020
Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge
Y Min, S Liu, C Lou, X Cui
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
DNN-DTIs: Improved drug-target interactions prediction using XGBoost feature selection and deep neural network
C Chen, H Shi, Z Jiang, A Salhi, R Chen, X Cui, B Yu
Computers in Biology and Medicine 136, 104676, 2021
Dilated-DenseNet for macromolecule classification in cryo-electron tomography
S Gao, R Han, X Zeng, X Cui, Z Liu, M Xu, F Zhang
International Symposium on Bioinformatics Research and Applications, 82-94, 2020
When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores
JJY Wang, X Cui, G Yu, L Guo, X Gao
Neural Computing and Applications 31 (3), 701-710, 2019
Homologous protein detection
X Cui, Y Min
Academic Press, 2019
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