| Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers J Cheng, D Wei, Y Ji, L Chen, L Yang, G Li, L Wu, T Hou, L Xie, G Ding, ... Genome medicine 10, 1-11, 2018 | 93 | 2018 |
| Integrative analysis reveals novel driver genes and molecular subclasses of hepatocellular carcinoma L Yang, Z Zhang, Y Sun, S Pang, Q Yao, P Lin, J Cheng, J Li, G Ding, ... Aging (albany NY) 12 (23), 23849, 2020 | 21 | 2020 |
| Dynamic alterations of genome and transcriptome in KRAS G13D mutant CRC PDX model treated with cetuximab H Zhang, L Yuan, L Liu, C Yan, J Cheng, Q Fu, Z Tong, W Jiang, Y Zheng, ... BMC cancer 20, 1-10, 2020 | 8 | 2020 |
| Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data J Cheng, GK Smyth, Y Chen F1000Research 12, 2023 | 1 | 2023 |
| hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data N Liu, J Martin, DD Bhuva, J Chen, M Li, SC Lee, M Kharbanda, J Cheng, ... bioRxiv, 2024.03. 26.586902, 2024 | | 2024 |
