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Ziyao Li
Ziyao Li
Ph.D. student, Center for Data Science, Peking University
Verified email at pku.edu.cn
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Year
DeePMD-kit v2: A software package for deep potential models
J Zeng, D Zhang, D Lu, P Mo, Z Li, Y Chen, M Rynik, L Huang, Z Li, S Shi, ...
The Journal of Chemical Physics 159 (5), 2023
782023
Uni-Fold: an open-source platform for developing protein folding models beyond AlphaFold
Z Li, X Liu, W Chen, F Shen, H Bi, G Ke, L Zhang
bioRxiv, 2022.08. 04.502811, 2022
352022
Conformation-Guided Molecular Representation with Hamiltonian Neural Networks
Z Li, S Yang, G Song, L Cai
International Conference on Learning Representations (ICLR-2021), 2021
23*2021
Deep Molecular Representation Learning via Fusing Physical and Chemical Information
S Yang, Z Li, G Song, L Cai
Advances in Neural Information Processing Systems (NeurIPS-2021) 34, 16346-16357, 2021
212021
GCN-LASE: Towards adequately incorporating link attributes in graph convolutional networks
Z Li, L Zhang, G Song
International Joint Conference on Artificial Intelligence (IJCAI-2019), 2959 …, 2019
212019
SepNE: Bringing Separability to Network Embedding
Z Li, L Zhang, G Song
AAAI Conference on Artificial Intelligence (AAAI-2019) 33 (01), 4261-4268, 2019
142019
Learning node representations from noisy graph structures
J Wang, Z Li, Q Long, W Zhang, G Song, C Shi
2020 IEEE international conference on data mining (ICDM), 1310-1315, 2020
132020
Stepping Back to SMILES transformers for fast molecular representation inference
W Zhu, Z Li, L Cai, G Song
arXiv preprint arXiv:2112.13305, 2021
52021
Uni-Fold Symmetry: harnessing symmetry in folding large protein complexes
Z Li, S Yang, X Liu, W Chen, H Wen, F Shen, G Ke, L Zhang
bioRxiv, 2022.08. 30.505833, 2022
42022
A Novel User Representation Paradigm for Making Personalized Candidate Retrieval
Z Liu, Y Xing, J Lian, D Lian, Z Li, X Xie
arXiv preprint arXiv:1907.06323, 2019
42019
Large scale network embedding: A separable approach
G Song, L Zhang, Z Li, Y Li
IEEE Transactions on Knowledge and Data Engineering 34 (4), 1829-1842, 2020
32020
Uni-Fold MuSSe: De Novo Protein Complex Prediction with Protein Language Models
J Zhu, Z He, Z Li, G Ke, L Zhang
bioRxiv, 2023.02. 14.528571, 2023
22023
Proteins and protein complexes prediction powered by uni-fold
X Liu, W Chen, F Shen
CASP15 abstracts, 143-145, 2022
22022
Learning Discrete Adaptive Receptive Fields for Graph Convolutional Networks
X Ma, Z Li, G Song, C Shi
SCIENCE CHINA Information Science, 2020
22020
UMD-fit: Generating Realistic Ligand Conformations for Distance-Based Deep Docking Models
E Alcaide, Z Li, H Zheng, Z Gao, G Ke
NeurIPS 2023 Generative AI and Biology (GenBio) Workshop, 2023
12023
Amalga: Designable Protein Backbone Generation with Folding and Inverse Folding Guidance
S Chen, Z Li, X Zeng, G Ke
bioRxiv, 2023.11. 07.565939, 2023
2023
Equivalent Distance Geometry Error for Molecular Conformation Comparison
S Yang, T Wen, Z Li, G Song
arXiv preprint arXiv:2201.08714, 2021
2021
Elaborating the Bayesian Priors in Unsupervised Graph Embedding via Graph Concepts
X Ma, Z Li, S Wei, G Song
International Conference on Advanced Data Mining and Applications (ADMA-2020 …, 2020
2020
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