| Early life stress perturbs the maturation of microglia in the developing hippocampus JC Delpech, L Wei, J Hao, X Yu, C Madore, O Butovsky, A Kaffman Brain, behavior, and immunity 57, 79-93, 2016 | 180 | 2016 |
| Exosomes produced by mesenchymal stem cells drive differentiation of myeloid cells into immunosuppressive M2-polarized macrophages in breast cancer S Biswas, G Mandal, S Roy Chowdhury, S Purohit, KK Payne, C Anadon, ... The Journal of Immunology 203 (12), 3447-3460, 2019 | 155 | 2019 |
| Comparing a few SNP calling algorithms using low-coverage sequencing data X Yu, S Sun BMC bioinformatics 14, 1-15, 2013 | 153 | 2013 |
| The inhibitory receptor TIM-3 limits activation of the cGAS-STING pathway in intra-tumoral dendritic cells by suppressing extracellular DNA uptake Á de Mingo Pulido, K Hänggi, DP Celias, A Gardner, J Li, ... Immunity 54 (6), 1154-1167. e7, 2021 | 127 | 2021 |
| IgA transcytosis and antigen recognition govern ovarian cancer immunity S Biswas, G Mandal, KK Payne, CM Anadon, CD Gatenbee, RA Chaurio, ... Nature 591 (7850), 464-470, 2021 | 126 | 2021 |
| A branched-chain amino acid-related metabolic signature characterizes obese adolescents with non-alcoholic fatty liver disease M Goffredo, N Santoro, D Tricò, C Giannini, E D’Adamo, H Zhao, G Peng, ... Nutrients 9 (7), 642, 2017 | 110 | 2017 |
| Single-cell characterization of the immune microenvironment of melanoma brain and leptomeningeal metastases I Smalley, Z Chen, M Phadke, J Li, X Yu, C Wyatt, B Evernden, JL Messina, ... Clinical Cancer Research 27 (14), 4109-4125, 2021 | 88 | 2021 |
| TGF-β-mediated silencing of genomic organizer SATB1 promotes Tfh cell differentiation and formation of intra-tumoral tertiary lymphoid structures RA Chaurio, CM Anadon, TL Costich, KK Payne, S Biswas, CM Harro, ... Immunity 55 (1), 115-128. e9, 2022 | 79 | 2022 |
| Catalase deletion promotes prediabetic phenotype in mice C Heit, S Marshall, S Singh, X Yu, G Charkoftaki, H Zhao, DJ Orlicky, ... Free Radical Biology and Medicine 103, 48-56, 2017 | 72 | 2017 |
| How do alignment programs perform on sequencing data with varying qualities and from repetitive regions? X Yu, K Guda, J Willis, M Veigl, Z Wang, S Markowitz, MD Adams, S Sun BioData mining 5, 1-12, 2012 | 72 | 2012 |
| Ovarian cancer immunogenicity is governed by a narrow subset of progenitor tissue-resident memory T cells CM Anadon, X Yu, K Hänggi, S Biswas, RA Chaurio, A Martin, KK Payne, ... Cancer Cell 40 (5), 545-557. e13, 2022 | 70 | 2022 |
| Multiple-kernel learning for genomic data mining and prediction CM Wilson, K Li, X Yu, PF Kuan, X Wang BMC bioinformatics 20, 1-7, 2019 | 49 | 2019 |
| HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher’s exact test S Sun, X Yu Statistical applications in genetics and molecular biology 15 (1), 55-67, 2016 | 43 | 2016 |
| HMM-DM: identifying differentially methylated regions using a hidden Markov model X Yu, S Sun Statistical applications in genetics and molecular biology 15 (1), 69-81, 2016 | 41 | 2016 |
| Estimation of immune cell content in tumor using single-cell RNA-seq reference data X Yu, YA Chen, JR Conejo-Garcia, CH Chung, X Wang BMC cancer 19, 1-11, 2019 | 35 | 2019 |
| IgA-dominated humoral immune responses govern patients' outcome in endometrial cancer G Mandal, S Biswas, CM Anadon, X Yu, CD Gatenbee, S Prabhakaran, ... Cancer research 82 (5), 859-871, 2022 | 32 | 2022 |
| Statistical and bioinformatics analysis of data from bulk and single-cell RNA sequencing experiments X Yu, F Abbas-Aghababazadeh, YA Chen, BL Fridley Translational Bioinformatics for Therapeutic Development, 143-175, 2021 | 27 | 2021 |
| TFEB links MYC signaling to epigenetic control of myeloid differentiation and acute myeloid leukemia S Yun, ND Vincelette, X Yu, GW Watson, MR Fernandez, C Yang, ... Blood cancer discovery 2 (2), 162-185, 2021 | 26 | 2021 |
| MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment S Sun, A Noviski, X Yu BMC bioinformatics 14, 1-9, 2013 | 26 | 2013 |
| The Association of MUC16 Mutation with Tumor Mutation Burden and Its Prognostic Implications in Cutaneous Melanoma X Wang, X Yu, M Krauthammer, W Hugo, C Duan, PA Kanetsky, JK Teer, ... Cancer Epidemiology, Biomarkers & Prevention 29 (9), 1792-1799, 2020 | 23 | 2020 |
