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Yubin Xie
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The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
🌱Cell 181 (2), 236-249, 2020
4402020
Regenerative lineages and immune-mediated pruning in lung cancer metastasis
AM Laughney, J Hu, NR Campbell, SF Bakhoum, M Setty, VP Lavallee, ...
🌱👓Nature medicine 26 (2), 259-269, 2020
3552020
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
JM Chan*, Á Quintanal-Villalonga*, VR Gao*, Y Xie*, V Allaj, ...
🌱✨Cancer Cell 39 (11), 1479-1496. e18, 2021
2582021
Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis
C Burdziak, D Alonso-Curbelo, T Walle, J Reyes, FM Barriga, D Haviv, ...
🌱Science 380 (6645), eadd5327, 2023
782023
Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis
Y Zhang, CJ Harris, Q Liu, W Liu, I Ausin, Y Long, L Xiao, L Feng, X Chen, ...
Proceedings of the National Academy of Sciences 115 (5), E1069-E1074, 2018
602018
MITI minimum information guidelines for highly multiplexed tissue images
D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ...
🌱Nature methods 19 (3), 262-267, 2022
532022
Pharmacological regulation of in situ tissue stem cells differentiation for soft tissue calcification treatment
JJ Hu, Z Yin, WL Shen, YB Xie, T Zhu, P Lu, YZ Cai, MJ Kong, BC Heng, ...
Stem Cells 34 (4), 1083-1096, 2016
352016
Controlled-release curcumin attenuates progression of tendon ectopic calcification by regulating the differentiation of tendon stem/progenitor cells
Y Chen*, Y Xie*, M Liu, J Hu, C Tang, J Huang, T Qin, X Chen, W Chen, ...
Materials Science and Engineering: C 103, 109711, 2019
232019
Progressive plasticity during colorectal cancer metastasis
AR Moorman, EK Benitez, F Cambuli, Q Jiang, A Mahmoud, M Lumish, ...
Nature, 1-8, 2024
142024
Cross-platform dataset of multiplex fluorescent cellular object image annotations
N Aleynick, Y Li, Y Xie, M Zhang, A Posner, L Roshal, D Pe’er, ...
🌱🤖👓Scientific Data 10 (1), 193, 2023
62023
Protocol to dissociate, process, and analyze the human lung tissue using single-cell RNA-seq
Á Quintanal-Villalonga, JM Chan, I Masilionis, VR Gao, Y Xie, V Allaj, ...
STAR protocols 3 (4), 101776, 2022
62022
Automatic Optic Disc/Cup Segmentation and Glaucoma Classification and Fovea Localization
X Bian*, Y Huang*, X Li*, X Niu*, J Wu*, Y Xie*
🤖✨Refuge reports, 2020
42020
A Bayesian method for rare variant analysis using functional annotations and its application to Autism
S Han, N Knoblauch, G Wang, S Zhao, Y Liu, Y Xie, W Sheng, HT Nguyen, ...
bioRxiv, 828061, 2019
32019
The neuroendocrine transition in prostate cancer is dynamic and dependent on ASCL1
R Romero, T Chu, TJ González Robles, P Smith, Y Xie, H Kaur, S Yoder, ...
Nature Cancer, 1-19, 2024
22024
Counterfactual hypothesis testing of tumor microenvironment scenarios through semantic image synthesis
D Li, Q Ma, J Chen, A Liu, J Cheung, Y Xie, H Gudjonson, T Nawy, ...
🌱🤖✨bioRxiv, 2020.10. 27.358101, 2020
22020
Addressing persistent challenges in digital image analysis of cancerous tissues
S Prabhakaran, C Yapp, GJ Baker, J Beyer, YH Chang, AL Creason, ...
bioRxiv, 2023
12023
A multi-scale model reveals cellular and physiological mechanisms underlying hyperpolarisation-gated synaptic plasticity
Y Xie, M Kazmierczyk, BP Graham, MB Dutia, MI Stefan, MB Dutia
bioRxiv, 418228, 2018
12018
Abstract NG05: Multi-omic approaches to study the role of plasticity in therapy resistance and metastasis in lung cancer
A Quintanal-Villalonga, JM Chan, VR Gao, Y Xie, D Pe’er, CM Rudin
Cancer Research 83 (7_Supplement), NG05-NG05, 2023
2023
Optimal tumor metastatic gene programs in pancreatic cancer
A Jiménez-Sánchez*, Y Xie*, R Sharma, TY Chu, V Liu, W Park, ...
Cancer Research 82 (12_Supplement), 279-279, 2022
2022
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Articles 1–19