| DNA methylation markers for pan-cancer prediction by deep learning B Liu, Y Liu, X Pan, M Li, S Yang, SC Li Genes 10 (10), 778, 2019 | 66 | 2019 |
| Alternative splicing of GSDMB modulates killer lymphocyte–triggered pyroptosis Q Kong, S Xia, X Pan, K Ye, Z Li, H Li, X Tang, N Sahni, SS Yi, X Liu, ... Science immunology 8 (82), eadg3196, 2023 | 30 | 2023 |
| Spatial imaging of glycoRNA in single cells with ARPLA Y Ma, W Guo, Q Mou, X Shao, M Lyu, V Garcia, L Kong, W Lewis, C Ward, ... Nature Biotechnology, 1-9, 2023 | 18 | 2023 |
| i-Modern: Integrated multi-omics network model identifies potential therapeutic targets in glioma by deep learning with interpretability X Pan, B Burgman, E Wu, JH Huang, N Sahni, SS Yi Computational and Structural Biotechnology Journal 20, 3511-3521, 2022 | 14 | 2022 |
| D-GPM: a deep learning method for gene promoter methylation inference X Pan, B Liu, X Wen, Y Liu, X Zhang, S Li, S Li Genes 10 (10), 807, 2019 | 12 | 2019 |
| AI-DrugNet: A network-based deep learning model for drug repurposing and combination therapy in neurological disorders X Pan, J Yun, ZHC Akdemir, X Jiang, E Wu, JH Huang, N Sahni, SS Yi Computational and Structural Biotechnology Journal 21, 1533-1542, 2023 | 9 | 2023 |
| Multi-omics to characterize the functional relationships of R-loops with epigenetic modifications, RNAPII transcription and gene expression X Pan, LF Huang Briefings in Bioinformatics 23 (4), bbac238, 2022 | 9 | 2022 |
| Deep learning based on multi-omics integration identifies potential therapeutic targets in breast cancer X Pan, B Burgman, N Sahni, SS Yi bioRxiv, 2022.01. 18.476842, 2022 | 4 | 2022 |
| The Development of Immunotherapy for the Treatment of Recurrent Glioblastoma X Liu, Z Zhao, W Dai, K Liao, Q Sun, D Chen, X Pan, L Feng, Y Ding, ... Cancers 15 (17), 4308, 2023 | 2 | 2023 |
| Circulating metabolites associated with tumor hypoxia and early response to treatment in bevacizumab-refractory glioblastoma after combined bevacizumab and evofosfamide A Lodi, R Pandey, J Chiou, A Bhattacharya, S Huang, X Pan, B Burgman, ... Frontiers in Oncology 12, 900082, 2022 | 1 | 2022 |
| Abstract LB251: Widespread epigenetic deregulation and its dependency on tumor sidedness in colorectal cancer B Burgman, X Pan, A Agrawal, N Sahni, SS Yi Cancer Research 84 (7_Supplement), LB251-LB251, 2024 | | 2024 |
| Abstract LB177: Tumor sideomics: spatial characteristics and functional deregulation in colorectal cancer B Burgman, X Pan, SS Yi Cancer Research 83 (8_Supplement), LB177-LB177, 2023 | | 2023 |
| AD-Syn-Net: systematic identification of Alzheimer’s disease-associated mutation and co-mutation vulnerabilities via deep learning X Pan, ZH Coban Akdemir, R Gao, X Jiang, GM Sheynkman, E Wu, ... Briefings in bioinformatics 24 (2), bbad030, 2023 | | 2023 |
| Cell-type-specific aberrant R-loop accumulation regulates target gene and confers cell-specificity X Pan, LF Huang bioRxiv, 2022.07. 19.500727, 2022 | | 2022 |
| Pleistocene Mammal Population Fluctuation Patterns Inferred by Their Genomes Y Liu, B Liu, X Pan, Q Shi, Z Xiao, S Li, S Li bioRxiv, 505131, 2018 | | 2018 |
