| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 1863 | 2022 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 125 | 2023 |
| FORGe: prioritizing variants for graph genomes J Pritt, NC Chen, B Langmead Genome biology 19 (1), 220, 2018 | 81 | 2018 |
| Reference flow: reducing reference bias using multiple population genomes NC Chen, B Solomon, T Mun, S Iyer, B Langmead Genome biology 22, 1-17, 2021 | 73* | 2021 |
| Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator YL Liao, YC Li, NC Chen, YC Lu 2018 IEEE 29th International Conference on Application-specific Systems …, 2018 | 27 | 2018 |
| LevioSAM: Fast lift-over of variant-aware reference alignments T Mun*, NC Chen*, B Langmead Bioinformatics, 2021 | 12 | 2021 |
| Improved sequence mapping using a complete reference genome and lift-over NC Chen, LF Paulin, FJ Sedlazeck, S Koren, AM Phillippy, B Langmead Nature Methods 21 (1), 41-49, 2024 | 10 | 2024 |
| Profiling genes encoding the adaptive immune receptor repertoire with gAIRR Suite MJ Lin, YC Lin, NC Chen, AC Luo, SK Lai, CL Hsu, JS Hsu, CY Chen, ... Frontiers in Immunology 13, 2022 | 8 | 2022 |
| Improving variant calling using population data and deep learning NC Chen, A Kolesnikov, S Goel, T Yun, PC Chang, A Carroll BMC bioinformatics 24 (1), 1-15, 2023 | 6 | 2023 |
| Characterization of large-scale genomic differences in the first complete human genome X Yang, X Wang, Y Zou, S Zhang, M Xia, L Fu, MR Vollger, NC Chen, ... Genome Biology 24 (1), 1-25, 2023 | 6* | 2023 |
| A memory-efficient fm-index constructor for next-generation sequencing applications on fpgas NC Chen, YC Li, YC Lu arXiv preprint arXiv:2102.03045, 2021 | 4 | 2021 |
| Power efficient special processor design for burrows-wheeler-transform-based short read sequence alignment NC Chen, TY Chiu, YC Li, YC Chien, YC Lu 2015 IEEE Biomedical Circuits and Systems Conference (BioCAS), 1-4, 2015 | 4 | 2015 |
| A special processor design for nucleotide basic local alignment search tool with a new banded two-hit method CY Chang, YC Li, NC Chen, XX Huang, YC Lu 2016 IEEE Nordic Circuits and Systems Conference (NORCAS), 1-5, 2016 | 2 | 2016 |
| Measuring, visualizing, and diagnosing reference bias with biastools MJ Lin, S Iyer, NC Chen, B Langmead Genome Biology 25 (1), 101, 2024 | 1 | 2024 |
| Queue-based segmentation algorithm for refining depth maps in light field camera applications YH Chen, NC Chen, YH Kao, YC Li, YC Lu 2016 IEEE 5th Global Conference on Consumer Electronics, 1-2, 2016 | 1 | 2016 |
| Beyond detection: AI-based classification of breast cancer invasiveness using cell-free orphan non-coding RNAs M Karimzadeh, TB Cavazos, NC Chen, NK Tbeileh, D Siegel, ... Cancer Research 84 (6_Supplement), 3678-3678, 2024 | | 2024 |
| Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer M Karimzadeh, A Momen-Roknabadi, TB Cavazos, Y Fang, NC Chen, ... medRxiv, 2024.04. 09.24304531, 2024 | | 2024 |
| Reducing Reference Bias in Genomic Sequence Data Processing NC Chen Johns Hopkins University, 2022 | | 2022 |
| A Hybrid Flow for Multiple Sequence Alignment with a BLASTn Based Pairwise Alignment Processor MJ Lin, CY Chang, YC Li, NC Chen, YC Lu 2018 IEEE International Symposium on Circuits and Systems (ISCAS), 1-5, 2018 | | 2018 |
| 使用快速取樣與連結策略之新式長序列基因映射器 陳乃群 | | 2017 |
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityVerified email at cs.jhu.edu
